Gene Information

Name : RPA0196 (RPA0196)
Accession : NP_945549.1
Strain : Rhodopseudomonas palustris CGA009
Genome accession: NC_005296
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 218627 - 219370 bp
Length : 744 bp
Strand : +
Note : observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished

DNA sequence :
ATGGACAGTCTCATTGAACCCTCGTCATTGGCCGGCGGCGCGCCGGACAGCATCGCGATCTCCAACGTCAACCTGTCGCT
GGGCAGCGGTGCCGCGCGGGTGCACATCCTCAAGGATATCAGCCTGCGCGTCGGCGCCGGCGAGACGATCGGGCTGATCG
GCCCGTCCGGCTCCGGCAAATCCACCCTGCTGATGGTGATGGCCGGGCTGGAGCGGCCCGACAGCGGTCAGGTGGTGGTG
GACGGGACCTCATTCAATGGTTTGGACGAGGACGCGCTGGCCCGCTTCCGCGGCCGCCAGATCGGAATCGTGTTTCAGTC
CTTCCATCTGATCCCGACCATGACGGCGCTCGAGAACGTCGCGGTGCCGCTGGAGCTGGCCGGTCAGGCTGGTGCCGCGG
ACCGCGCGGCCCGCGAGCTGACCTCGGTCGGCCTCGGCGAACGGCTGCACCATTACCCGTCCCAGCTCTCCGGCGGCGAG
CAGCAGCGCGTCGCGCTCGCCCGCGCGCTCGCGCCCGATCCGGCGATCCTGGTGGCCGACGAGCCGACCGGCAACCTCGA
CGAGACCACCGGCAAGCAGATCGTCGACCTGTTGTTCGCCAAGCATGCCGAGCGCGGCATGACGCTGGTGCTGGTGACGC
ACGATTCCGCATTGGCGCAGCGCTGCGACCGGGTGGTGCGGCTGCGCTCGGGGCGGATCGACACCACGCAGCCGGGCTCC
GCCGCACGCGCACGGTCGGCCTGA

Protein sequence :
MDSLIEPSSLAGGAPDSIAISNVNLSLGSGAARVHILKDISLRVGAGETIGLIGPSGSGKSTLLMVMAGLERPDSGQVVV
DGTSFNGLDEDALARFRGRQIGIVFQSFHLIPTMTALENVAVPLELAGQAGAADRAARELTSVGLGERLHHYPSQLSGGE
QQRVALARALAPDPAILVADEPTGNLDETTGKQIVDLLFAKHAERGMTLVLVTHDSALAQRCDRVVRLRSGRIDTTQPGS
AARARSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-26 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-31 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPA0196 NP_945549.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 2e-33 47
RPA0196 NP_945549.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 1e-37 45
RPA0196 NP_945549.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 9e-38 44