Gene Information

Name : mrfD (plu0772)
Accession : NP_928117.1
Strain : Photorhabdus luminescens TTO1
Genome accession: NC_005126
Putative virulence/resistance : Virulence
Product : MrfD protein
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 892422 - 893171 bp
Length : 750 bp
Strand : +
Note : Highly similar to periplasmic fimbrial chaperone precursor MrpD of Proteus mirabilis

DNA sequence :
ATGAAATTGAAGAATACAATTAATGTAGTCACGATCGCTATCTTAAGTCTGTCGGTGATCAGTGAGTCAATGGCGGCCAT
TGCGCTGGATCGTACCCGCGTCGTGTTTAACGGTGGGGACAAATCCACCAGTATGGATATCAGCAACCAGAACAAAGAGT
TGCCGTATCTGGCGCAGGGATGGATAGAAGATGAGCAGGGTAACAAAATCAATGGTCCGTTAGTGGTGACACCACCGGTG
CAGCGGGTGGAACCGGGCGCTAAGAGCCAGGTGAAAATTCAGTCACTGCCAACAATCGCACAGTTACCCCAAGATCGGGA
AAGCTTGTTCTATTTTAATTTGCGTGAAATTCCACCACGCAGCAAGAAACCGAATACCTTGCAGATTGCGCTACAAACCC
GGATCAAGCTGTTCTATCGTCCGAAAGCCATTTTTGCCAGCCGTACCGATTTGGATAATCCGTGGCAAGAGAAGATGACT
TTGACGCGTCAGGGGGACCGATATCAGGTGAACAACCCGACACCCTATTACATCACCGTGGTGGATGCAGCAAGCCAGCT
TAAGGGTAAAACGGTGGTGGACTTTAAGCCATTGATGATCGCGCCCAAAAGTAATGTGGTGCTGAGTGGGAGTGCCGGGG
CATTAGGCAGTGCGCCGGTGCTGACATATGTCAATGATTATGGTGGCCGGCCGCAATTGATTTTTAGTTGTTCAGGCAAC
CATTGTCAGGTGGCTCAACGTTCGTCGTGA

Protein sequence :
MKLKNTINVVTIAILSLSVISESMAAIALDRTRVVFNGGDKSTSMDISNQNKELPYLAQGWIEDEQGNKINGPLVVTPPV
QRVEPGAKSQVKIQSLPTIAQLPQDRESLFYFNLREIPPRSKKPNTLQIALQTRIKLFYRPKAIFASRTDLDNPWQEKMT
LTRQGDRYQVNNPTPYYITVVDAASQLKGKTVVDFKPLMIAPKSNVVLSGSAGALGSAPVLTYVNDYGGRPQLIFSCSGN
HCQVAQRSS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 3e-53 53
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 3e-62 53
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 3e-62 52
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 3e-62 52
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 3e-62 52
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 3e-62 52
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 3e-62 52
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 1e-63 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
mrfD NP_928117.1 MrfD protein VFG0885 Protein 1e-53 53
mrfD NP_928117.1 MrfD protein VFG1547 Protein 2e-62 53
mrfD NP_928117.1 MrfD protein VFG0896 Protein 1e-62 52