Gene Information

Name : mrfC (plu0771)
Accession : NP_928116.1
Strain : Photorhabdus luminescens TTO1
Genome accession: NC_005126
Putative virulence/resistance : Virulence
Product : Outer membrane usher protein MrfC
Function : -
COG functional category : N : Cell motility
COG ID : COG3188
EC number : -
Position : 889743 - 892298 bp
Length : 2556 bp
Strand : +
Note : -

DNA sequence : 
ATGGCTTTGTTTTTGGGTTTGACCACTGAATATGACAGGGTGGTCTCGGTTCGGTGTGTCCTGAAACCTCTTATTGTTTT
GGTATTGCTTGCTTTAATGGGTACTCATGCGGTGTATGCGGAAGAGGAAATTGAATTTAATACGGATGTGTTGGATGTTC
AGGATCGGGCTCGGATTGATTTAAAAGAATTTTCCCGCGCCGGTTATATCATGCCGGGGGATTATCAGATGGCGGTACGT
CTGAATAACAGCGAGCTGCCGGAGATGCCGGTGACTTTTATGGTACCACCGGATGATCCGAAGGGGAGTGTGGCGTGTTT
GCCGCCTGAGCTGGTGAAGCAGTTGGGGCTGCGGGCGGAATGGGAATCAAAGATGACCTGGTGGAACAATAATCAGTGTC
TGGAGATTAAAACGCTGCCTGGCATGACAGTGCGCGGTGATCTGAGCAGTGACACGCTATACCTGAGTATGCCTCAGGCT
TATCTCGAATATCACTCACCAGACTGGGACCCGCCGTCACGTTGGGATGAGGGGATTTTCGGAATGATGTTTGATTATAA
CGTCAATGCTCAGATCGCTAAGCCGGCGAAGGGAAGTGAAAATCAGAATGTCAGTGCTAATGGTACGACCGGGATAAATT
TGGGGGCGTGGCGGCTACGGGCAGACTGGCAATCACAGTATAACCACGTCACGGGGCGGGCAGGGAGCACAGAGAAAAAC
TGGGATTGGAGCCGTTATTACTTGTACCGGGCAATACCACATTGGCAGGCTAAGCTAACGTTGGGTGAGGATTACCTTAA
TTCAGATATCTTTGACAGCTTCCGTTTTACCGGTTTGAGTCTGGTGACGGATGACAATATGTTGCCGCCGAACCTGCGAG
GCTATGCGCCAGAGGTGACGGGGGTAGCGAAAACCAATGCCAGAGTGACTATTCGTCAGCAGGGACGGGTGTTGTATGAG
ACCCAAGTTGCGCCAGGTCCATTCCGTATTCAGGACATCAATGATGCAGTGAGCGGCAAACTGGATGTGCGGGTAGAGGA
GCAGGATGGCGGTTTACAGGAGTTTCAGATCGATACTGCGAATATTCCCTATTTAACCCGTCCGGGCCGGGTGCAGTACA
AACTGGCGGCGGGTAAGCCGACTAACTGGAAACATCACAGTGAGGGATCGGGCTTTGGTCTTGGTGAGTTTTCTTGGGGA
ATAAACAATGGTTGGTCGCTGTACGGTGGGATATTGGGGGCCGGGAATTATAACGCGTTGTCATTGGGGATTGGGCGTGA
TCTGATGGTCTTTGGCGCACTTTCCTTTGATGTCACTGAATCCCGCGCCCATTTACCGGATGAGGACCAAACATTGACTG
GTGGCTCTTATCGTCTCAGTTATTCCAAGCGTTTTGAGGAGTATGACAGCCAGGTGACTTTTGCCGGTTACCGTTTCTCG
GAACGTGACTTTATGAGTATGAGCCAGTATCTGGATCGCCGTTATCACGATGGTGATGCAGAGAGTAATAAAGAACTTTA
CACCATTATGTTGAATAAGCAGTTCACACATATTGGTACCAGTATTTACTTGAATTACAGCCACCAGACTTATTGGAACC
GTTCGAATAACGATCGCTATAACTTATCGATATCACGTTATTTTGATATTGGCAGTTATAAGAACATTAACCTGAATCTG
TCTGCTTACCGTAATAAATATGAAGGTAAAAATGACGACGGGATGTATATGACATTATCCCTGCCGTGGGGTAATTCAGG
AACGATCAGTTATAACGCAATGGCCAACCGGGAAGGTAATTCCCACACGGTAGGTTATTACGACCGGATTAATGAAAACA
GTAACTATCGTTTAGCGGTTGGTTCCAGTATTGACGGCAAGGCCGCGGCTAACGGTTATTTAACCCATTACGGCGATCGC
GCTCAACTGACGACCAGTGCGAGTTATCAGGATGGACGTTATACCACGGGAGCGCTTTCTATTCAGGGGGGGATGACCGT
GACGCCGAAAGGCGCGGCACTGCATCGTATTAATATGCCCGGGACCACCCGTTTGATGGTGGATACCGATGGTATAGGTG
GCGTACCGGTGAAAGGCTTCGGCGCGATTACCCATACCAATATGTTCGGTAAGGCGGTGATCTCTGATGTAAACAACTAT
TACCGTAACAGTGCGAGTATTGATTTGAACAAACTGCCGGACAATGTGGAGGCAATCCGGTCGGTACAACAAGCAACACT
GACGGAAGGGGCGATTGGTTATCGTAAATTCCAAGTGATATCCGGTGAAAAAGCGATGGGTATGATCCGCTTGTCGGATG
GTAGCTCGCCGCCGTTTGGGGCAACGGTGCTGAATAAGGATCAACGGGAGATCGGTATCGTCAGTGATGGTGGGAATGTC
TATCTCAGCGGGATCAATCCGGCAGAGAAACTGGATGTGCGTTGGGATGGGGAGTTGCAGTGTGTGATTGAGCTGCCACA
AGAATTACCAAAAGTCGAAGAGATGGCTTCGTTATTACTGCTCTGTCAGTTAGCCGACGACAATAAACAGCCATAA

Protein sequence : 
MALFLGLTTEYDRVVSVRCVLKPLIVLVLLALMGTHAVYAEEEIEFNTDVLDVQDRARIDLKEFSRAGYIMPGDYQMAVR
LNNSELPEMPVTFMVPPDDPKGSVACLPPELVKQLGLRAEWESKMTWWNNNQCLEIKTLPGMTVRGDLSSDTLYLSMPQA
YLEYHSPDWDPPSRWDEGIFGMMFDYNVNAQIAKPAKGSENQNVSANGTTGINLGAWRLRADWQSQYNHVTGRAGSTEKN
WDWSRYYLYRAIPHWQAKLTLGEDYLNSDIFDSFRFTGLSLVTDDNMLPPNLRGYAPEVTGVAKTNARVTIRQQGRVLYE
TQVAPGPFRIQDINDAVSGKLDVRVEEQDGGLQEFQIDTANIPYLTRPGRVQYKLAAGKPTNWKHHSEGSGFGLGEFSWG
INNGWSLYGGILGAGNYNALSLGIGRDLMVFGALSFDVTESRAHLPDEDQTLTGGSYRLSYSKRFEEYDSQVTFAGYRFS
ERDFMSMSQYLDRRYHDGDAESNKELYTIMLNKQFTHIGTSIYLNYSHQTYWNRSNNDRYNLSISRYFDIGSYKNINLNL
SAYRNKYEGKNDDGMYMTLSLPWGNSGTISYNAMANREGNSHTVGYYDRINENSNYRLAVGSSIDGKAAANGYLTHYGDR
AQLTTSASYQDGRYTTGALSIQGGMTVTPKGAALHRINMPGTTRLMVDTDGIGGVPVKGFGAITHTNMFGKAVISDVNNY
YRNSASIDLNKLPDNVEAIRSVQQATLTEGAIGYRKFQVISGEKAMGMIRLSDGSSPPFGATVLNKDQREIGIVSDGGNV
YLSGINPAEKLDVRWDGELQCVIELPQELPKVEEMASLLLLCQLADDNKQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pixC CAE85159.1 PixC protein Not tested PAI V 536 Protein 0.0 51
prfC CAD42029.1 PrfC protein Virulence PAI II 536 Protein 3e-172 47
papC YP_854254.1 outer membrane usher protein PapC Virulence PAI I APEC-O1 Protein 4e-171 47
papC AAZ04424.1 outer membrane usher protein Virulence PAI I APEC-O1 Protein 3e-171 47
papC NP_755465.1 PapC protein Virulence PAI I CFT073 Protein 5e-172 47
papC YP_002414015.1 Outer membrane usher protein PapC Not tested Not named Protein 6e-172 47
papC_2 NP_757034.1 PapC protein Virulence PAI II CFT073 Protein 5e-172 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
mrfC NP_928116.1 Outer membrane usher protein MrfC VFG1548 Protein 2e-172 47
mrfC NP_928116.1 Outer membrane usher protein MrfC VFG0884 Protein 2e-172 47
mrfC NP_928116.1 Outer membrane usher protein MrfC VFG0895 Protein 2e-172 47