Gene Information

Name : plu4477 (plu4477)
Accession : NP_931643.1
Strain : Photorhabdus luminescens TTO1
Genome accession: NC_005126
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 5227559 - 5228815 bp
Length : 1257 bp
Strand : -
Note : Highly similar to phage integrase

DNA sequence : 
ATGGCCCTGACAGACGTTGTAGCCCGCACCGCTAAGCCTCGCGAGCAAGCTTACAAACTCGCAGATGCACATGGCCTGTA
CCTGATGATAAGCCCTGGCGGCTCTAAGCGCTGGTATCTCAAGTATCGTTTCGAAGGTAAGGAAAGCCGGATTGCTTTTG
GCGCTTATCCGCTGATCTCACTGGCGAAAGCCAGAGAAAAGCGCGATGAGGTACGGTTGTTGCTAGCCGATGGTATCAAC
CCGGCGGAAAAACGGGGGGAGGGAAAAAAAGAGGCTCAGGACGCGCTGATAACCTTTGAGAAAGTGGCAAGAGACTGGCA
TCGAAATATCAGCCAAAACCGCTGGTCAGAAACCCATGCCGGACGGGTATGGCGCGATATGGAACGCAATATTTTGCCAG
CGATAGGTCATCGCCACATAGCGGATCTGAAGACTAAAGACTTGCTTGAGCCGCTGAAAGCCGTGGAGCAAAACGGCCAT
CTCGATTTAGCGTCACGACTACGCCAGCGAGTGACCGATATTATGCGCTATGCGGTGCAGAATGATTTGATAGAGCGTAA
TCCTGCTCAGGATCTCTCCGGGGCGATAGCGCCGCCGAAGGCAACCCATCGCCCGGCGTTGAAACTGGATAAGCTACCGG
ATTTTCTGGCAAGGATTGAAAACTATAAAGGGCGGACATTAACCACCCTGGCCTTAAAGTTCACACTGTGCGTCTTTATC
CGTTCCAGTGAACTACGCTTTGCCCGCTGGACCGAGATCGATTTTAAACGTGCTATGTGGACTATACCGGCTGAACGTGA
AGCGATACCGGGTGTAAAACACTCTCAGCGTGGGGCAAAAATGCGCACTGAGCATTTAGTACCGTTATCCCGCCAGGCTT
TGGCGTTGCTGAAAGAAATTCAGGCTATCAGCGGCGGTCACGAACTGATATTCCCGGGCGATCGTCGCCCGACTAAACCG
ATGAGTGAAAACACCGTCAATAATGCATTGCGGGTCATGGGATATGACACCACTACTGAACTATGCGGGCATGGTTTCCG
CACGATGGCCTGTAGCGCACTGGTTGAGTCAGGGCAGTGGTCACGAGATGCGGTCGAGCGGCAGATGAGTCACCAGGAAC
GCGATAGCGTGCGGGCGGCTTATATTCATAAGGCTGAGCATATTGAAGAACGAAGGCTAATGCTGCAATGGTGGGCGGAT
TATCTGGATGCGAATCGGGAAGGGTATGTGGTGCCGTATGAGTTTATGGGGGCATGA

Protein sequence : 
MALTDVVARTAKPREQAYKLADAHGLYLMISPGGSKRWYLKYRFEGKESRIAFGAYPLISLAKAREKRDEVRLLLADGIN
PAEKRGEGKKEAQDALITFEKVARDWHRNISQNRWSETHAGRVWRDMERNILPAIGHRHIADLKTKDLLEPLKAVEQNGH
LDLASRLRQRVTDIMRYAVQNDLIERNPAQDLSGAIAPPKATHRPALKLDKLPDFLARIENYKGRTLTTLALKFTLCVFI
RSSELRFARWTEIDFKRAMWTIPAEREAIPGVKHSQRGAKMRTEHLVPLSRQALALLKEIQAISGGHELIFPGDRRPTKP
MSENTVNNALRVMGYDTTTELCGHGFRTMACSALVESGQWSRDAVERQMSHQERDSVRAAYIHKAEHIEERRLMLQWWAD
YLDANREGYVVPYEFMGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 8e-121 62
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 3e-125 60
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 3e-125 60
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-121 59
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 1e-121 59
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 6e-122 59
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 3e-122 59
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 5e-122 59
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 1e-121 59
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 5e-122 59
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 3e-123 59
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-123 59
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-123 59
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-120 59
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-122 59
int AAL51003.1 CP4-like integrase Not tested LEE Protein 1e-122 59
int AAK00456.1 Int Not tested SHI-1 Protein 4e-114 58
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 5e-123 58
int AAL51028.1 CP4-like integrase Not tested LEE Protein 5e-123 58
int-phe AAL60261.1 Int-phe Not tested LEE Protein 5e-123 58
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 3e-122 58
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 6e-123 58
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 6e-123 58
int CAC81896.1 integrase Not tested LEE II Protein 2e-115 58
int CAA08754.1 integrase Not tested HPI Protein 1e-114 56
int YP_002346908.1 integrase Not tested HPI Protein 5e-114 56
int CAB59974.1 integrase Not tested HPI Protein 4e-115 56
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 5e-114 56
int2 NP_993013.1 integrase Not tested HPI Protein 5e-114 56
int CAA21384.1 - Not tested HPI Protein 5e-114 56
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-111 56
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 2e-94 55
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 1e-113 55
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 1e-113 55
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 1e-78 54
unnamed AAD17660.1 unknown Not tested HPI Protein 1e-110 54
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 2e-105 53
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-75 42
int ACU09430.1 integrase Not tested LEE Protein 2e-75 42
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 3e-75 42
ECs4534 NP_312561.1 integrase Not tested LEE Protein 3e-75 42
int AAD44730.1 Int Not tested SHI-2 Protein 1e-75 42
int CAC39282.1 integrase Not tested LPA Protein 6e-76 42
aec33 AAW51716.1 Int Not tested AGI-3 Protein 5e-76 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 4e-74 41
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 4e-74 41
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-74 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
plu4477 NP_931643.1 hypothetical protein VFG1536 Protein 4e-121 62
plu4477 NP_931643.1 hypothetical protein VFG0626 Protein 5e-122 59
plu4477 NP_931643.1 hypothetical protein VFG1693 Protein 2e-122 59
plu4477 NP_931643.1 hypothetical protein VFG0783 Protein 1e-75 42
plu4477 NP_931643.1 hypothetical protein VFG0598 Protein 2e-74 41