Gene Information

Name : plu4460 (plu4460)
Accession : NP_931626.1
Strain : Photorhabdus luminescens TTO1
Genome accession: NC_005126
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 5215487 - 5216752 bp
Length : 1266 bp
Strand : -
Note : Highly similar to phage integrase

DNA sequence :
ATGAAACTCAATGCCAGGCAAATAGAGGCAGCAAAGCCAAAAGATAAAGCCTATAAACTCGCTGATGGTGGCGGGTTGTA
TCTGGAAATTACTCCGCGAGGTTCAAAATACTGGCGTATGAAATACCGCCGACCTACTGATAAAAAAGAAGACAGGTTAG
CATTTGGGGTTTACCCGGTAATTTCTCTTGCTGATGCCAGAGCTAAACGTAATGAGGCTAAAAAACTGATAGCTAATGGT
ATAGATCCCAAAGCAACACAGAAAGAGACACAAGCTGAGGCATCAGGCGAATTCAATTTTGAAACTATTGCTAGGAAATG
GCACTCCAGTAATAAGCGGTGGGGTGACTATAACCGGGCGCGTGTACTGCGCAGCCTTGAACAATACATCTTTCCTCATA
TTGGTAAAATTGATATCCGTCAGTTAAAGACCCGTGAGCTACTTGTACCTATAAAAGCCGTTGATGATGCTGATAAGGTC
GATGTTGCTAAACGTCTACAGCAATGTGTTACCGCTATTATGCGCTACGCTGTGCAATGTGGAATTATTGAAAGCAATCC
CGCTTTAGATATGGCGGGGGCACTTTCTACAACGAAAACCGAACATCATCCTGCTTTACCGCCTAGCCGGTTACCTGAAT
TACTCGAAAGGACTGCTTTGTTTAAAGGGCGTGAAGTGACACGTATCGCTATTGAATTTGGTTTATTGACCTTTGTTAGA
GCCAGTAAGCTACGTTTCGTTAGGTGGGATGAATTCGACTTTGATAATGCGATATGGGAAATACCCGGTAAGCGCGAAGC
CATAGAAAACGTTAAGTTTTCAGAACGCGGGATGAAGATGAAAACACCGCACATAGTACCGTTGAGCAGTCAAGCTATGG
CACTACTCGAAAAGCTTAAAGAATATAGCGGTGATAATCGATGTTTATTCCCCGGTGATAGAGACCCCAATAAGGTCATG
AGCGAAAACACGGTGAATAAAGCACTTCGAGTTATGGGCTACGACATTAAGACAGAAATTTGTTACCACGGATTTAGAAC
AATGGCGCGGGGCGCTATGGGAGAGTCTGGGATTTGGGCTGATGATGTTATAGAGAGGCAACTGAGCCACTTGGAAAGAA
ATAATGTTAAAGCGGCTTACCTACACACATCACATCATTTAGATGAATGTCGCCTTATGTTGCAATGGTGGGCGGATTAC
CTAGATGCTAATAGGCAAGGATTTATTTCACCCTATGACTACGCCCAATCAACAGGCAGGGGATAA

Protein sequence :
MKLNARQIEAAKPKDKAYKLADGGGLYLEITPRGSKYWRMKYRRPTDKKEDRLAFGVYPVISLADARAKRNEAKKLIANG
IDPKATQKETQAEASGEFNFETIARKWHSSNKRWGDYNRARVLRSLEQYIFPHIGKIDIRQLKTRELLVPIKAVDDADKV
DVAKRLQQCVTAIMRYAVQCGIIESNPALDMAGALSTTKTEHHPALPPSRLPELLERTALFKGREVTRIAIEFGLLTFVR
ASKLRFVRWDEFDFDNAIWEIPGKREAIENVKFSERGMKMKTPHIVPLSSQAMALLEKLKEYSGDNRCLFPGDRDPNKVM
SENTVNKALRVMGYDIKTEICYHGFRTMARGAMGESGIWADDVIERQLSHLERNNVKAAYLHTSHHLDECRLMLQWWADY
LDANRQGFISPYDYAQSTGRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 4e-136 72
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-108 56
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 1e-108 56
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 1e-108 56
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 5e-109 56
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 8e-109 56
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 1e-108 56
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 4e-110 56
int AAK16198.1 Int Not tested PAI-I AL862 Protein 3e-110 56
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 3e-110 56
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-109 56
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-109 56
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 7e-109 55
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 4e-107 55
int AAK00456.1 Int Not tested SHI-1 Protein 7e-101 55
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 5e-110 55
int AAL51028.1 CP4-like integrase Not tested LEE Protein 5e-110 55
int-phe AAL60261.1 Int-phe Not tested LEE Protein 5e-110 55
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 3e-109 55
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 6e-110 55
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 6e-110 55
int CAC81896.1 integrase Not tested LEE II Protein 4e-102 55
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 5e-97 54
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-100 53
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-100 53
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 6e-95 52
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 6e-95 52
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 2e-60 46
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 1e-87 46
int2 NP_993013.1 integrase Not tested HPI Protein 1e-87 46
int CAA21384.1 - Not tested HPI Protein 1e-87 46
int CAA08754.1 integrase Not tested HPI Protein 4e-88 46
int YP_002346908.1 integrase Not tested HPI Protein 1e-87 46
int CAB59974.1 integrase Not tested HPI Protein 7e-89 46
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 7e-69 46
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 9e-81 46
unnamed AAD17660.1 unknown Not tested HPI Protein 3e-85 45
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 7e-61 41
int AAD44730.1 Int Not tested SHI-2 Protein 1e-61 41
int CAC39282.1 integrase Not tested LPA Protein 3e-62 41
aec33 AAW51716.1 Int Not tested AGI-3 Protein 3e-62 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
plu4460 NP_931626.1 hypothetical protein VFG0626 Protein 5e-109 56
plu4460 NP_931626.1 hypothetical protein VFG1693 Protein 3e-109 55
plu4460 NP_931626.1 hypothetical protein VFG1536 Protein 3e-97 54