Gene Information

Name : plu3788 (plu3788)
Accession : NP_930994.1
Strain : Photorhabdus luminescens TTO1
Genome accession: NC_005126
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4451122 - 4452105 bp
Length : 984 bp
Strand : +
Note : Similar to cytotoxic effector protein YopT of Yersinia spp.

DNA sequence : 
TTGTCTCCCATCTCAAGTATTAATCACCAAAGAATATTTCCTACCCAGCAGCTCGATACCACAGCCGTTAATCAACCACA
GGGTGAACTGTCGGGTAAATCCCTGAAAGTCTCTTCCCCCAGACCGGGGTTGTTAGAGCGCCTCTCAGCGGCGATTCAAC
GCAATCTACCGGGCCACTCCATGCTCGATCGCCAACTCACTACTGATGGCAAGAAGAACCAAGAGAGCCGCTTCTCGTTC
AGCATGATAAAAGACAGAATCGTTCACTTTGCGGTGAGCACCACGTTAGGGAGTGTTCGAAATTCTGCGAGTAAGCACGG
CGGCGAAATCACCTTCAAGTTCGCCCAGACCAAGGGGACCTTTCTGGATCAAATCATGAAACATAGTGACACCGCCGGCG
GGGTTTGTGAATCCATATCAGCTCATTGGATAAGCGCTCATGCCAAAGGGGAAAGTGTCTTCGATCAACTCTATGTGGGC
GGCCAAAAAGGACAGTTTCATATCGACTCTCTGGTTTCCATTAAGCAGTTACAGATGGATGGTATAGCCCAAGATGTCGA
TCAAGACACTATGACCGAATCTTGGCTTAGCGAAAATGGCATCCAACCACGCATGAAAACGATAACCTATCAAAGCGCCA
ACGGGCCCATTAATTACAAACGTCCAATCGAAGTCAACGGTCAGACCGGCAGTAATGGCACATCAGATCTACTAAACGCT
ATTCTAGACACAGGCGATAAAGGTTCTAGCTATAAAAAGATTAGTTTTTCAGGACAGATGGCCGGGCATGCCGTAGCCGC
TTATGTAGATGACCAGAAGGGTGTTACTTTCTTTGACCCTAACTTTGGCGAGTTCCACTTTCCAAACAAAGAATCATTCT
CTAATTGGTTCTCTCAAGATTTCTGGTCCAAATCCATGTACAACAAGGAAATCGGTCTTGGGCAACATTTCCAAGTCCTC
AACTACGAGCCTAAAACACAATGA

Protein sequence : 
MSPISSINHQRIFPTQQLDTTAVNQPQGELSGKSLKVSSPRPGLLERLSAAIQRNLPGHSMLDRQLTTDGKKNQESRFSF
SMIKDRIVHFAVSTTLGSVRNSASKHGGEITFKFAQTKGTFLDQIMKHSDTAGGVCESISAHWISAHAKGESVFDQLYVG
GQKGQFHIDSLVSIKQLQMDGIAQDVDQDTMTESWLSENGIQPRMKTITYQSANGPINYKRPIEVNGQTGSNGTSDLLNA
ILDTGDKGSSYKKISFSGQMAGHAVAAYVDDQKGVTFFDPNFGEFHFPNKESFSNWFSQDFWSKSMYNKEIGLGQHFQVL
NYEPKTQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAO18078.1 putative type III secreted effector LopT Not tested TTSS locus Protein 6e-129 85

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
plu3788 NP_930994.1 hypothetical protein VFG0375 Protein 7e-83 53