|
Name : sctD (plu3779) Accession : NP_930985.1 Strain : Photorhabdus luminescens TTO1 Genome accession: NC_005126 Putative virulence/resistance : Virulence Product : Type III secretion component protein SctD Function : - COG functional category : - COG ID : - EC number : - Position : 4445948 - 4447216 bp Length : 1269 bp Strand : + Note : Similar to Yop proteins translocation protein D DNA sequence : ATGAGTTGGAAAATTCGCTTTTACCGCGGACTGAATAAAAGTATTGAGGTCAATTTAGCTGAGGGGCGTTTAGCCATCGG CTCAGACCCCCTACAGGCAGATATCGTTCTGGTGGATGAAGATGTTGCTCCTGTGCACCTGATCTTAGAAGTCGAACCAG ACTCAATTCGCCTGTTGGAATGGGCCGGGGAAGCTGCACCAAGCCAGAATGGCGAACCGCTGTCACCGGGTGCGACATTG CAAGCGCTGGCCCGTCAGGAAGTTGGCCCGTTATTGTGGGCTTTTTGTGACCAGCAACATACATTCCCAAGCCAACTAGC TGAACCCGTGGTCACACCACAGCGCCCTGCCCGGCAAAATCGCAGCCGGGTAGCAGGCGGAATGTTAATACTTTGTCTGG TACTGGCACTCGGTCTTCTGGCGCTACTTGGACATGAAGGGTGGCAAAGAAACCACATGTCCAATGGCATAGCCGAGCAA GAACTACGCCGTTTTCTCAGTAGTGATTCAGCCTATCGCCAAGTGAGCGTACAAATGATGCCCAATCACGGGCCGCCGTT GCTCAAAGGTTATGTGGCTCTCAACCACCAACGGCTGGCCCTGCAACAGTATCTCGATACCCACTCTCTCAGTTATCGGC TGGAGCTACGTACTATGGAAGAGTTACGTCAGGGGGTAGATTTCATTTTACAAAAATTAGGCTATGCCCAGATCCAAAGT AGCGATGGTAAACAACCCGGTTGGATCCGCCTTATAGGCGAAGTCACTGATACCAGCCAGCAATGGAACAATATCGAGTC ACTACTCAAACGTGATGTTCCTGGTTTGCTTGGCATAGAAAACCAGACGCGGTTCACCGGTAACCACCTCAAGCGACTGG ATATGTTATTGGCTAAACATGATTTACCTGACACGCTGACCTACAAGGATAAAAATGATCGTATCGAGTTCATAGGTCAA CTGGATGAACACCAAACGCATAACTTCTACCGCTTACAGCAGGTATTTAAGCAAGAATTCGGCAACCAGCCGGCACTGGT ATTACTGAATAATAAGCAGCTCACCCGCAATGATGAGCTCAATTTCGACGTCCGGGCCGTTTCTCTCGGGCGTGTGCCCT ATGTGGTACTCAAAAACAACTTGCGTTACCCGGTTGGAGCAACCACAGAAAACGGTTTAATAATCGAGGCCATCCGTCAA GATGCGATTGTTATTACCAAGGGTAAGCAACAATTTATCGTCAAACTTAACAGGAGCCCAGCTTCATGA Protein sequence : MSWKIRFYRGLNKSIEVNLAEGRLAIGSDPLQADIVLVDEDVAPVHLILEVEPDSIRLLEWAGEAAPSQNGEPLSPGATL QALARQEVGPLLWAFCDQQHTFPSQLAEPVVTPQRPARQNRSRVAGGMLILCLVLALGLLALLGHEGWQRNHMSNGIAEQ ELRRFLSSDSAYRQVSVQMMPNHGPPLLKGYVALNHQRLALQQYLDTHSLSYRLELRTMEELRQGVDFILQKLGYAQIQS SDGKQPGWIRLIGEVTDTSQQWNNIESLLKRDVPGLLGIENQTRFTGNHLKRLDMLLAKHDLPDTLTYKDKNDRIEFIGQ LDEHQTHNFYRLQQVFKQEFGNQPALVLLNNKQLTRNDELNFDVRAVSLGRVPYVVLKNNLRYPVGATTENGLIIEAIRQ DAIVITKGKQQFIVKLNRSPAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscD | AAO18032.1 | LscD | Virulence | TTSS locus | Protein | 1e-172 | 91 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sctD | NP_930985.1 | Type III secretion component protein SctD | VFG0212 | Protein | 6e-102 | 49 |
| sctD | NP_930985.1 | Type III secretion component protein SctD | VFG0403 | Protein | 2e-84 | 47 |
