Gene Information

Name : sctS (plu3772)
Accession : NP_930978.1
Strain : Photorhabdus luminescens TTO1
Genome accession: NC_005126
Putative virulence/resistance : Virulence
Product : Type III secretion component protein SctS
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 4438904 - 4439170 bp
Length : 267 bp
Strand : +
Note : Similar to Yop proteins translocation protein S

DNA sequence :

ATGAGTAATGCTGATATTTTACATTTCACTAGCCAATCTCTCTGGTTAGTGTTAATCCTTTCCCTGCCACCGGTACTCAT
GGCTGCGGCAGTGGGAACATTGGTCTCGTTGATCCAAGCACTCACCCAAATACAAGAACAAACATTGGGTTTTGTTATCA
AATTAATTGCAGTCATTATCACCCTGTTCGCTACCGCTACCTGGCTTGGCAACGAACTCTACAGCTTCGCCAATATGACC
TTTCTTAAGGTGCCACAGATCAAATGA

Protein sequence :

MSNADILHFTSQSLWLVLILSLPPVLMAAAVGTLVSLIQALTQIQEQTLGFVIKLIAVIITLFATATWLGNELYSFANMT
FLKVPQIK

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
lscS	AAO18039.1	LscS	Virulence	TTSS locus	Protein	3e-33	98
hrcS	AAT96147.1	HrcS	Virulence	T-PAI	Protein	6e-11	51
hrcS	AAT96201.1	HrcS	Virulence	T-PAI	Protein	6e-11	51
hrcS	NP_791221.1	type III secretion protein HrcS	Virulence	Hrp PAI	Protein	7e-11	51
hrcS	AAG33885.1	HrcS	Virulence	Hrp PAI	Protein	5e-11	51
hrcS	ABQ88360.1	HrcS	Virulence	Hrp PAI	Protein	3e-09	51
hrpO	AAB05076.1	HrpO	Virulence	Hrp PAI	Protein	3e-09	51
hrcS	AAB06006.1	HrcS	Virulence	Hrp PAI	Protein	2e-13	49
ssaS	NP_456108.1	putative type III secretion protein	Virulence	SPI-2	Protein	4e-12	46
ssaS	CAA68200.1	secretion system apparatus, SsaS	Virulence	SPI-2	Protein	2e-12	46
ssaS	NP_805091.1	type III secretion protein	Virulence	SPI-2	Protein	4e-12	46
ssaS	YP_216428.1	secretion system apparatus protein SsaS	Virulence	SPI-2	Protein	3e-12	46
ssaS	NP_460385.1	type III secretion system apparatus protein	Virulence	SPI-2	Protein	3e-12	46
ECs3724	NP_311751.1	EpaQ	Not tested	LIM	Protein	4e-11	45
epaQ	AAZ31292.1	EpaQ	Virulence	ETT2	Protein	3e-11	45
spaQ	NP_461810.1	needle complex export protein	Virulence	SPI-1	Protein	2e-08	44
spaQ	YP_217808.1	surface presentation of antigens; secretory proteins	Virulence	SPI-1	Protein	2e-08	44
spaQ	NP_457283.1	secretory protein (associated with virulence)	Virulence	SPI-1	Protein	2e-08	44
spaQ	NP_806492.1	virulence-associated secretory protein	Virulence	SPI-1	Protein	2e-08	44
escS	AFO66341.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	9e-13	43
escS	AFO66401.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	9e-13	43
hrcS	AAT96263.1	HrcS	Virulence	S-PAI	Protein	3e-10	42
hrcS	AAT96304.1	HrcS	Virulence	S-PAI	Protein	3e-10	42
hrcS	AAT96344.1	HrcS	Virulence	S-PAI	Protein	3e-10	42
ysaS	AAS66847.1	YsaS	Not tested	SSR-1	Protein	9e-08	42
escS	AAL57528.1	EscS	Virulence	LEE	Protein	2e-13	41
escS	YP_003232139.1	T3SS structure protein EscS	Virulence	LEE	Protein	3e-13	41
escS	CAC81848.1	EscS protein	Virulence	LEE II	Protein	2e-13	41
unnamed	AAL06355.1	EscS	Virulence	LEE	Protein	2e-13	41
escS	AAK26701.1	EscS	Virulence	LEE	Protein	2e-13	41
escS	YP_003223489.1	T3SS structure protein EscS	Virulence	LEE	Protein	3e-13	41
hrcS	ABA47280.1	HrcS	Virulence	S-PAI	Protein	7e-10	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
sctS	NP_930978.1	Type III secretion component protein SctS	VFG0395	Protein	2e-29	78
sctS	NP_930978.1	Type III secretion component protein SctS	VFG0187	Protein	2e-22	75
sctS	NP_930978.1	Type III secretion component protein SctS	VFG0043	Protein	8e-15	55
sctS	NP_930978.1	Type III secretion component protein SctS	VFG0520	Protein	1e-12	46
sctS	NP_930978.1	Type III secretion component protein SctS	VFG1013	Protein	5e-09	46
sctS	NP_930978.1	Type III secretion component protein SctS	VFG0550	Protein	5e-09	44
sctS	NP_930978.1	Type III secretion component protein SctS	VFG1772	Protein	1e-10	42
sctS	NP_930978.1	Type III secretion component protein SctS	VFG2132	Protein	1e-10	41