Gene Information

Name : yfeD (plu2675)
Accession : NP_929910.1
Strain : Photorhabdus luminescens TTO1
Genome accession: NC_005126
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein yfeD-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3178204 - 3179091 bp
Length : 888 bp
Strand : +
Note : -

DNA sequence : 
ATGAATGAGTTGACACAGTTACTCACTGAGCCGTTTATGTTTCCATTTATGCAACGGGCAATATTCGCAGCGATTGTAAC
AGGCGCGGTATGTGCAATACTCTCTTGTTATCTGGTTCTTAAAGGCTGGTCGTTAATGGGGGACGCCATTTCTCACGCGG
TATTACCAGGTATTGTGCTGGCTTTTGCTGCCGGTATACCGCTGGCTATTGGCGCATTCCTTTCCGGTATCTTTTGTGCT
GTTGCAACAGGATATCTGAAAGAACATAGCCGGATAAAAGAAGATACTGTCATGGGAATTGTTTTTTCAGGCATGTTTGC
CTTTGGTTTAGTTCTTTTTGCCCGCATAGATACCGACCAACATCTGACTCATATTCTGTTCGGAAATATACTAGGGATCA
CTAAAGATGAGTTGCATCAAACATTATGGATTACCTGCATCACTATGGCGGTGATACTGCTAAAGCGCAAAGACTTCATG
CTTTATTGCTTCGATCCGAACCAAGCACGCGTAGTAGGATTGCCTGTTAAACTTTTGCATTACGGTTTGCTTTGCCTGCT
GTCCATGACCATCGTCGCTTCCCTGCAAGCCGTGGGAATGATTTTGGTTATCGCAATGTTGATATCACCAGGCATTATCG
CTTTCATGTTATGCCGCAGTTTTGACCGAATGTTAATTGTCGCTATCATTGCATCAGTCAGTTCCAGTGTCCTGGGTACT
CTGATCAGTTTCCACATTGATGGTGCAACGGGGCCATGCATTGTTATTGTTCAGGCTATCTTCTTTACACTGGCACTGGC
TTACAGTCAGATAAAACTTGTAAGAGCAAAATCCAAACGTAAAACGTATCAAGCAGCCCTACAAATCTCTAACGAGCCCA
ATCAATAA

Protein sequence : 
MNELTQLLTEPFMFPFMQRAIFAAIVTGAVCAILSCYLVLKGWSLMGDAISHAVLPGIVLAFAAGIPLAIGAFLSGIFCA
VATGYLKEHSRIKEDTVMGIVFSGMFAFGLVLFARIDTDQHLTHILFGNILGITKDELHQTLWITCITMAVILLKRKDFM
LYCFDPNQARVVGLPVKLLHYGLLCLLSMTIVASLQAVGMILVIAMLISPGIIAFMLCRSFDRMLIVAIIASVSSSVLGT
LISFHIDGATGPCIVIVQAIFFTLALAYSQIKLVRAKSKRKTYQAALQISNEPNQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-65 54
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-65 54
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-65 54
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 5e-65 53
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 5e-65 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD NP_929910.1 chelated iron transport system membrane protein yfeD-like protein BAC0442 Protein 2e-104 76
yfeD NP_929910.1 chelated iron transport system membrane protein yfeD-like protein BAC0352 Protein 8e-66 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD NP_929910.1 chelated iron transport system membrane protein yfeD-like protein VFG0528 Protein 8e-66 54