Gene Information

Name : yfeC (plu2674)
Accession : NP_929909.1
Strain : Photorhabdus luminescens TTO1
Genome accession: NC_005126
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein YfeC
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3177329 - 3178207 bp
Length : 879 bp
Strand : +
Note : -

DNA sequence : 
ATGACAGAACTTTTGCTGCAACCTTTTCACTATAATTACATGGTAAAAGCCATCTGGGTTAGTGCCATCGTCGGTGCTGT
CTGTGCCTTCCTTTCTTCCTACCTGATGTTAAAAGGCTGGTCATTGATGGGAGACGCGCTCTCTCACTCAGTTGTGCCTG
GCGTCGCTGGTGCTTATGCGCTGGGTCTTCCTTATGCAGGTGGTGCTTTTTTTACCGGAATGCTGGCAGCTCTATCTATG
ACTTTAGTTCGTCATATCACTCGGTTACGTGAAGATGCAGTAATCGGGTTCATTTTTTCCACTTTCTTTGCGGCCGGCTT
ATTAATCGTTTCCCTCAATCCTACATCAGTTAACGTACAAACTATTATTTTCGGCAATATCCTTGGCATCGCGGATGAAG
ATGTTCTCCAAGTTGAAATCATTATTGCGATTTCATTTATCGTGCTCATGTTTATCTGGAAAGATTTGCTAATTGTATTT
TTTGATGAAACGCATGCTCGCTCTATCGGCTTATCTCCCTTGCGGATGAAAATCATTTTTTTTACTTTGTTGAGTGCTTG
TACTGTCGCAGCCTTACAAACTGTCGGCGCTATTCTGGTGATTGCAATGGTTGTCACTCCAGGCGCAACAGCTTACTTAT
TAACAGATCGTTTTAAGCACCTGCTGATCATTGCCGTTACTATTGGTTCCCTGACCAGTGCATTTGGCGCTTACCTAAGC
TTCTTCCTTAACGGCGCTACTGGTGGTGTCATTGTCACGCTGCAAACCATTATTTTCCTACTAGCATTCTTCTTTGCACC
AAAGCATGGGCTATTCGCTTCACGTATACGTGCCAGAAAAGAATCCTCAGCCTTGGCTCAGGAGACAACACAATTATGA

Protein sequence : 
MTELLLQPFHYNYMVKAIWVSAIVGAVCAFLSSYLMLKGWSLMGDALSHSVVPGVAGAYALGLPYAGGAFFTGMLAALSM
TLVRHITRLREDAVIGFIFSTFFAAGLLIVSLNPTSVNVQTIIFGNILGIADEDVLQVEIIIAISFIVLMFIWKDLLIVF
FDETHARSIGLSPLRMKIIFFTLLSACTVAALQTVGAILVIAMVVTPGATAYLLTDRFKHLLIIAVTIGSLTSAFGAYLS
FFLNGATGGVIVTLQTIIFLLAFFFAPKHGLFASRIRARKESSALAQETTQL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_461784.1 permease Virulence SPI-1 Protein 6e-77 66
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 5e-77 66
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 5e-77 66
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 4e-77 66
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-77 66
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 9e-40 41
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-39 41
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-39 41
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-39 41
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-39 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeC NP_929909.1 chelated iron transport system membrane protein YfeC BAC0441 Protein 9e-100 88
yfeC NP_929909.1 chelated iron transport system membrane protein YfeC BAC0351 Protein 3e-77 66
yfeC NP_929909.1 chelated iron transport system membrane protein YfeC BAC0352 Protein 5e-40 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeC NP_929909.1 chelated iron transport system membrane protein YfeC VFG0527 Protein 2e-77 66
yfeC NP_929909.1 chelated iron transport system membrane protein YfeC VFG0528 Protein 5e-40 41