Gene Information

Name : fliP (plu1938)
Accession : NP_929205.1
Strain : Photorhabdus luminescens TTO1
Genome accession: NC_005126
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 2305197 - 2305931 bp
Length : 735 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
TTGTCATGCCGCCTGGGGATGATACTCGCTGCGCTTATTTTACCGATGGATGCCGCGGCACAGTTGCCGGGCATCATCAG
TCAACCGCTGGCAAACGGTGGACAAAGCTGGTCACTACCGGTTCAAACGTTAGTTTTCATTACCGCGCTGACCTTTATTC
CCGCCGCCTTACTCATGATGACCAGTTTTACCCGCATCATTATCGTGTTGGGTTTACTGCGTAATGCTTTAGGCACCCCA
TCGGCACCACCTAATCAGGTTCTACTTGGACTGGCGCTATTTATGACATTTTTCATTATGTCACCGGTTTTCGATAAAGT
TTATCAAGATGCTTATCTGCCTTTTAGTGAAGATAAAATCAGTCTGGAAACCGCTTTAGAAAATGGTGCCAAGCCATTAC
GGCAATTTATGTTGCGTCAGACAAGGGAAAACGATTTAGCGCTGTTTGCTCGTCTTGCTGATCAGCCGCCGTTTGAAACC
GCCGATTCCGTTCCTATGCGAGTACTGATGCCAGCATTTATTACCAGCGAACTAAAAACCGCTTTTCAGATTGGTTTTAC
CCTGTTTATTCCATTTTTGATTATTGACCTGGTGGTCGCCAGCGTATTGATGGCGTTGGGGATGATGATGGTCCCCCCTG
CTACCATCTCACTGCCCTTCAAACTCATGCTATTTGTTCTGGTTGACGGCTGGCAATTACTACTGGGTTCTCTGGCACAA
AGTTTTTACGGTTGA

Protein sequence : 
MSCRLGMILAALILPMDAAAQLPGIISQPLANGGQSWSLPVQTLVFITALTFIPAALLMMTSFTRIIIVLGLLRNALGTP
SAPPNQVLLGLALFMTFFIMSPVFDKVYQDAYLPFSEDKISLETALENGAKPLRQFMLRQTRENDLALFARLADQPPFET
ADSVPMRVLMPAFITSELKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQ
SFYG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-27 45
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-27 45
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-27 45
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-28 44
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-34 44
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-34 44
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 5e-23 43
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 4e-23 43
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 7e-22 42
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 4e-22 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 4e-22 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-33 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 3e-31 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 9e-31 42
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 6e-23 41
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-32 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-33 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-33 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-33 41
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP NP_929205.1 flagellar biosynthesis protein FliP VFG2338 Protein 2e-93 86
fliP NP_929205.1 flagellar biosynthesis protein FliP VFG2494 Protein 3e-71 67
fliP NP_929205.1 flagellar biosynthesis protein FliP VFG2016 Protein 1e-63 62
fliP NP_929205.1 flagellar biosynthesis protein FliP VFG1259 Protein 2e-61 56
fliP NP_929205.1 flagellar biosynthesis protein FliP VFG0188 Protein 5e-32 43
fliP NP_929205.1 flagellar biosynthesis protein FliP VFG0044 Protein 1e-32 42
fliP NP_929205.1 flagellar biosynthesis protein FliP VFG0394 Protein 5e-31 41