Gene Information

Name : plu0133 (plu0133)
Accession : NP_927503.1
Strain : Photorhabdus luminescens TTO1
Genome accession: NC_005126
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 142562 - 143035 bp
Length : 474 bp
Strand : +
Note : Highly similar radC-like protein YkfG of Escherichia coli

DNA sequence : 
ATGTCTGGACTAATTTTAACTCCAGCTTTTTCGGTAAATGATCAACGTATTATTCGACGGGCACTGCGATTGCTGGAAAA
ATACCAGCGCCAACCGGGAGAGCAGTTTCTTGCTGCCAGTTATACGAAAACCTGGCTACAACTGCATCTGGCACGGCAGG
AGAGAGAAGTCTTTGTCGTACTCTACCTCGATAATCAACATCGCCTGCTGGAACATGAAACTCTATTTCTCGGCACGATT
AGCCATACCGAAGCACATCCCCGTGAAATTGTGAAATCAGCACTGCGCCATAACGCGGCAGCGGTGATTCTCGCACATAA
CCATCCGTCAGGGATTACGGATGCCAGCAAAGCAGATCGCACTATCACTGACCGGATCGTAAATACCCTGAATCTGGTGG
AAGTACGGGTACTGGGTCATTTCATTATCGGTGATGGCAATACGCTGTCTTTTGCTGAGATGGGCTGGCTGTAA

Protein sequence : 
MSGLILTPAFSVNDQRIIRRALRLLEKYQRQPGEQFLAASYTKTWLQLHLARQEREVFVVLYLDNQHRLLEHETLFLGTI
SHTEAHPREIVKSALRHNAAAVILAHNHPSGITDASKADRTITDRIVNTLNLVEVRVLGHFIIGDGNTLSFAEMGWL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 2e-32 52
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 3e-33 52
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 6e-25 52
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 2e-32 51
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 8e-33 51
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 2e-32 51
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 1e-33 51
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 6e-34 51
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 6e-33 51
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 8e-34 51
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 8e-34 51
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 5e-33 51
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 4e-33 51
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 4e-33 51
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 8e-33 51
unnamed AAL08475.1 unknown Not tested SRL Protein 8e-33 51
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 8e-33 51
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 6e-33 51
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 5e-33 51
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 5e-32 50
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 5e-26 49
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 5e-26 49
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-26 49
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 3e-26 43
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 7e-24 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
plu0133 NP_927503.1 hypothetical protein VFG1617 Protein 7e-33 51
plu0133 NP_927503.1 hypothetical protein VFG1528 Protein 3e-33 51
plu0133 NP_927503.1 hypothetical protein VFG1678 Protein 4e-34 51
plu0133 NP_927503.1 hypothetical protein VFG0660 Protein 2e-33 51
plu0133 NP_927503.1 hypothetical protein VFG1066 Protein 3e-33 51
plu0133 NP_927503.1 hypothetical protein VFG1119 Protein 1e-26 49