Gene Information

Name : qseB (CV_0891)
Accession : NP_900561.1
Strain : Chromobacterium violaceum ATCC 12472
Genome accession: NC_005085
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein qseB
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 918514 - 919176 bp
Length : 663 bp
Strand : +
Note : identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0745

DNA sequence : 
ATGCGGATACTGGTGGTGGAGGACGACGCGCAGATCGGCGACGGCCTCAAGATGGGCCTGCAACAACTGGGTTTCGCGGT
GGACTGGCTGCGCGATGGCCGGCAAGCGCTGGCCGCGCTGCCGGCCGCGCCTTACGACGCCGTGGTGCTGGACCTGGGCC
TGCCCGGCATGGACGGCATGGACATCCTCGCCGCCTGGCGCCGCGCCGGGCGCGACGAGCCGGTGCTGGTGCTGACCGCG
CGCGACGCGCTGGCCGACCGCGTCGGCGGCCTGGACGCCGGCGCCGACGACTACCTGGCCAAGCCCTTCGCCTTGTCCGA
GGTGGCGGCGCGGCTGCGCGCGCTGACCCGCCGCCGCCACGGCCAATGCGGCCCCTTGCTCAGCCACGGCCGGCTCAGCC
TGGACCCGGTGGCGCGGACGGCGACGCTGGACGGCGCGCTGCTGGAGCTGACCGCGCGCGAGCTGGCGCTGCTGGAGCTG
CTGCTCAGCAGCAAGGGCCGGGTGTTGTCGCGCGAGCTGATAGAGGAAAAACTGTACGGCTGGGGACAGGAGTTGGGGAG
CAACGCGCTGGAAGTGCATGTCCACCATTTGCGCAAGAAGCTGGGCGCAGGCTTCATCCGCACGCTGCGGGGCATAGGCT
ACACGCTGGGAGAGCCGGCGTGA

Protein sequence : 
MRILVVEDDAQIGDGLKMGLQQLGFAVDWLRDGRQALAALPAAPYDAVVLDLGLPGMDGMDILAAWRRAGRDEPVLVLTA
RDALADRVGGLDAGADDYLAKPFALSEVAARLRALTRRRHGQCGPLLSHGRLSLDPVARTATLDGALLELTARELALLEL
LLSSKGRVLSRELIEEKLYGWGQELGSNALEVHVHHLRKKLGAGFIRTLRGIGYTLGEPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-31 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB NP_900561.1 transcriptional regulatory protein qseB BAC0487 Protein 5e-31 46
qseB NP_900561.1 transcriptional regulatory protein qseB BAC0083 Protein 6e-22 44
qseB NP_900561.1 transcriptional regulatory protein qseB BAC0638 Protein 1e-23 43
qseB NP_900561.1 transcriptional regulatory protein qseB NC_002516.2.879194.p Protein 5e-18 42
qseB NP_900561.1 transcriptional regulatory protein qseB BAC0308 Protein 2e-23 42
qseB NP_900561.1 transcriptional regulatory protein qseB BAC0347 Protein 2e-21 41
qseB NP_900561.1 transcriptional regulatory protein qseB BAC0197 Protein 2e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB NP_900561.1 transcriptional regulatory protein qseB VFG0473 Protein 2e-28 47
qseB NP_900561.1 transcriptional regulatory protein qseB VFG1390 Protein 1e-22 44