Gene Information

Name : tpx (CV_0870)
Accession : NP_900540.1
Strain : Chromobacterium violaceum ATCC 12472
Genome accession: NC_005085
Putative virulence/resistance : Virulence
Product : thiol peroxidase
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG2077
EC number : 1.11.1.-
Position : 897982 - 898479 bp
Length : 498 bp
Strand : +
Note : identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2077

DNA sequence : 
ATGGCAACCGTAACCCTGCGCGGCAATCCGGTGGACGTGGCGGGCAAGCTGCCGGCCAAGGGCGAGCAGGCCCCGGCGCT
GCAACTGACCGGCGCCGATTTGGCCGAGGTGTCGCTGGCCAGCTACGCCGGCAAGCGCAAGATCCTCAACATCTTCCCCA
GCGTGGATACCCCGACCTGCGCGACGTCCGTGCGCAAGTTCAATGAGAAGGCGGCCGCGCTGGCCGACACCGTGGTGTTG
TGCGTGTCCGCCGACCTGCCGTTCGCGCAGAAGCGCTTCTGCGGCGCCGAAGGCATCGAAAACGTGGTGACCCTGTCCAC
CTTCCGCAACGGCAGCTTCGCCGAAGCCTACGGCGTCAAGCTGGCCTCCGGCCCGTTGGCCGGCCTGACCGCGCGCGCGG
TGGTGGTGCTGGACGCCGACGACAAGGTGCTGCACAGCCAGCTGGTGGGCGAGATCGCCGACGAGCCGGATTACGCAGCC
GCCCTGGCGGCGCTGTAA

Protein sequence : 
MATVTLRGNPVDVAGKLPAKGEQAPALQLTGADLAEVSLASYAGKRKILNIFPSVDTPTCATSVRKFNEKAAALADTVVL
CVSADLPFAQKRFCGAEGIENVVTLSTFRNGSFAEAYGVKLASGPLAGLTARAVVVLDADDKVLHSQLVGEIADEPDYAA
ALAAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tpx NP_230472.1 thiol peroxidase Virulence VPI-1 Protein 1e-30 48
tagD AAK20781.1 toxR-activated gene D protein Virulence VPI Protein 7e-31 48
tpx YP_001216305.1 thiol peroxidase Not tested VPI-1 Protein 1e-30 47
tagD AAK20751.1 toxR-activated gene D protein Virulence VPI Protein 7e-31 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tpx NP_900540.1 thiol peroxidase VFG0087 Protein 3e-31 48