Gene Information

Name : pilR (CV_0073)
Accession : NP_899743.1
Strain : Chromobacterium violaceum ATCC 12472
Genome accession: NC_005085
Putative virulence/resistance : Virulence
Product : two-component system, regulatory protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 83600 - 84913 bp
Length : 1314 bp
Strand : -
Note : identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2204

DNA sequence : 
ATGACTAAGACACTGCGCGTATTGATCGTCGACGACGAACCGGACATCCGCGAACTGCTGGAACTGACCTTGCTGAAAAT
GGGCCTCGCCCCGGTATGCGCCGGCAGCGTGGCCGAGGCGCGTTCCGCGCTGGACGCGGGCGGATTCGACCTGGCGCTGA
CCGATATGCGGCTGCCTGACGGCGAGGGCTTGGAGGTGGTCAACCACATCGGCGAGTCCGGGCTGGATGTGCCCATCGCC
GTGATCACCGCCTACGGCAGCGCCGACAACGCGGTGCGGGCGATGAAGGCTGGCGCTTTCGACTACTTGCAGAAGCCGGT
CAGCCTGGCCCAGCTGCGCAGCCTGGTGAAGACGGCGCTGAAGGTGGAAACGCCGGTCCGCGCCGCCGTCCAGCAGCGGC
TGCTGGGCGAGTCGCCGGCGATACAGGAAGTGCTGCGGCTGACGGACAAGCTGTCGCGCAGCCAGGCCGCGGTGTACATC
GGCGGGGAGTCCGGCACCGGCAAGGAACAGGCGGCGCGGCTGATCCACGAGCTGGGTCCGCGCGCCGACAAGCCCTTCGT
CGCCGTCAACTGCGGCGCGATCCCGGAAAGCCTGATGGAGAGCGAGTTCTTCGGCTGCCGCAAGGGCGCGTTCACCGGCG
CGGACGCCGACCGCGACGGCTTCTTCCAGCAGGCGCAGGGCGGCACCCTGTTCCTGGACGAAGTGGCCGAGCTGCCGCTG
GCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGACCGTGCGCAAGCTGGGTGCCAGCCAGGAAGAGGCGGTCGA
TGCCCGCATCATCTGCGCCACCCACCGCGATCTGGCGGCGCGGGTGGAGTCCGGGCAGTTCCGACAGGACCTGTACTACC
GCCTCAACGTGCTGCCGCTGAGAATGCCGCCGCTGCGCGAGCTGCGCGACGACATCCCGCTGTTCGCCGAGCGGCTGCTG
CAGCGCTTCGGCGGCGCGTCCGCGCCGCAGTTGTCCGCCGACGCCCGCCGCGCGCTGCAGGACTACGCCTACCCCGGCAA
TTTCCGCGAGCTGGAGAACATCCTGGAGCGGGCGGTGGCGCTGGCCGCCGGGCCCGCGCTGTCGCGCGAAGACCTGCAGC
TGACGCCCTGCGCCGAGCACGCGCCGGAGCCCGGCAGCGGCGAGCCGCTGCAGGACTACCTGGACCGCGTCGAGCGCGAG
GCCATCGTCAAGGCGCTGGAGGGCACCCGCTACAACCGCACCCAGGCCGCTAAGAAACTGGGGGTCACCTTCCGCTCGCT
GCGTTACCGGATGGAGCGGCTGGGCGTGAAGTGA

Protein sequence : 
MTKTLRVLIVDDEPDIRELLELTLLKMGLAPVCAGSVAEARSALDAGGFDLALTDMRLPDGEGLEVVNHIGESGLDVPIA
VITAYGSADNAVRAMKAGAFDYLQKPVSLAQLRSLVKTALKVETPVRAAVQQRLLGESPAIQEVLRLTDKLSRSQAAVYI
GGESGTGKEQAARLIHELGPRADKPFVAVNCGAIPESLMESEFFGCRKGAFTGADADRDGFFQQAQGGTLFLDEVAELPL
AMQVKLLRAIQEKTVRKLGASQEEAVDARIICATHRDLAARVESGQFRQDLYYRLNVLPLRMPPLRELRDDIPLFAERLL
QRFGGASAPQLSADARRALQDYAYPGNFRELENILERAVALAAGPALSREDLQLTPCAEHAPEPGSGEPLQDYLDRVERE
AIVKALEGTRYNRTQAAKKLGVTFRSLRYRMERLGVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 3e-82 45
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 3e-82 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR NP_899743.1 two-component system, regulatory protein BAC0467 Protein 3e-72 46
pilR NP_899743.1 two-component system, regulatory protein BAC0089 Protein 2e-63 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR NP_899743.1 two-component system, regulatory protein VFG1214 Protein 9e-114 59