Gene Information

Name : intB (CV_0651)
Accession : NP_900321.1
Strain : Chromobacterium violaceum ATCC 12472
Genome accession: NC_005085
Putative virulence/resistance : Unknown
Product : prophage CP4-like integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 680663 - 681856 bp
Length : 1194 bp
Strand : -
Note : identified by sequence similarity; ORF located using Blastx/COG0582

DNA sequence : 
ATGCCGCTCACCGACACCGCCATCCGCAATGCCAAGCCCAGGGAAGACGGAAAACCTGCCAAGTTGGCAGACGGCGGCAG
CCTCTTTCTTTGGGTCATGCCCAACGGGGCGAAGTACTGGCGCATGGCCTACCGCTTCGACGGCAAACAGAAAACCCTCG
CCTTTGGCGTCTACCCCACTACTTCGCTGAAAGACGCGCGCGAGAAGCGTGAAGCTGCGCGAAAACTGCTGGCAGCAGGA
ACCGACCCCAACGCAGCCAAGAAAGAGCAGAAGCGCGAGCGGCAGCTCACCGTTGAAAATTCCTTCGAAATTGTCGCCCG
CGAGTGGTACGACAAACAGCTGCCACGCTGGACCGATGACCACGCAGTCAGAATCCTCGACTCCCTCAAGGCTGACGCCT
TCCCCGACCTAGGCAAGCTGCCGGTTTCCCAACTAACCGCACCGGTGATCTTGGATACCATCCGCAAGATAGAAAAACGC
GGCGCAGTGGAAACCGCCCAACGCGTGCTGCAAAGAATCAGCGCCGTCATCCGCTATGCCATCCAGACCGGCCGAGCCGT
CCACAACCCGGCAACGGACCTTACAGGCGCGATACGTGCCAAGAAGGTGGAACACCGCCCTGCGCTGCCGCGCGGCGAGC
TCCGCGAGTTCTACCGGCGCCTGGCGGCCGAACCGCTCTATATTCCGACCCGCATTGCCATGCACCTGCTGATGCTGACC
TTTGTTCGCCCAGGCGAACTACGCGCCGCGCGCTGGGAAGAGTTTGACGAAGAACGCGCAGAATGGCGCATCCCGGCCGA
GCGCATGAAGATGCGCGAGCCTCACCTTGTACCGCTATCGCGCCAGGCGCTGGAACTGCTGAAGGAGTTGCGGCCGCTGA
CTGGCAAAAGCGCCCTGCTCTTCCCGGCCGTGACAGACCTCAAGAAGCCCATGTCCGAAAACACGCTTGGCTATGCCATG
GGCCGCATGGGCTACAAAGGCACGGCGACCCCTCACGGCTTCCGTGCTCTGGCTTCAACAGTTCTTAACGAAGAAGGCTT
TGATCCAGATATCATAGAAAAGCAGCTCGCACATGCAGAGCGCAACAAAGTGCGTGCTGCTTACCATCGAGCGGAATATT
TGGAAGAGCGCAGGAAAATGATGCAGTGGTGGGCTGAATTCTTAGGTCGCCATCAAAAAAGCAGTATTGACTAG

Protein sequence : 
MPLTDTAIRNAKPREDGKPAKLADGGSLFLWVMPNGAKYWRMAYRFDGKQKTLAFGVYPTTSLKDAREKREAARKLLAAG
TDPNAAKKEQKRERQLTVENSFEIVAREWYDKQLPRWTDDHAVRILDSLKADAFPDLGKLPVSQLTAPVILDTIRKIEKR
GAVETAQRVLQRISAVIRYAIQTGRAVHNPATDLTGAIRAKKVEHRPALPRGELREFYRRLAAEPLYIPTRIAMHLLMLT
FVRPGELRAARWEEFDEERAEWRIPAERMKMREPHLVPLSRQALELLKELRPLTGKSALLFPAVTDLKKPMSENTLGYAM
GRMGYKGTATPHGFRALASTVLNEEGFDPDIIEKQLAHAERNKVRAAYHRAEYLEERRKMMQWWAEFLGRHQKSSID

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 1e-85 49
int AAD44730.1 Int Not tested SHI-2 Protein 2e-87 49
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-86 48
int ACU09430.1 integrase Not tested LEE Protein 2e-86 48
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-86 48
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-86 48
int CAC39282.1 integrase Not tested LPA Protein 6e-88 48
aec33 AAW51716.1 Int Not tested AGI-3 Protein 3e-88 48
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-86 48
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 4e-86 48
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 4e-86 48
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 3e-77 47
int AAL51003.1 CP4-like integrase Not tested LEE Protein 1e-78 47
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 1e-78 47
int AAK16198.1 Int Not tested PAI-I AL862 Protein 6e-79 47
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 6e-79 47
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 4e-83 47
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 4e-83 47
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-79 46
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 3e-79 46
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-79 46
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-78 46
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-79 46
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-78 46
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-78 46
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 1e-78 46
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 1e-78 46
int AAL51028.1 CP4-like integrase Not tested LEE Protein 1e-78 46
int-phe AAL60261.1 Int-phe Not tested LEE Protein 1e-78 46
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 9e-78 46
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 6e-80 46
int CAC81896.1 integrase Not tested LEE II Protein 1e-72 46
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 5e-79 45
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 5e-79 45
int AAK00456.1 Int Not tested SHI-1 Protein 3e-73 45
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 2e-74 45
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 5e-83 44
intA AAB00935.1 integrase A Not tested vap locus Protein 2e-66 43
int YP_002346908.1 integrase Not tested HPI Protein 2e-62 41
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 2e-62 41
int2 NP_993013.1 integrase Not tested HPI Protein 2e-62 41
int CAA21384.1 - Not tested HPI Protein 2e-62 41
int CAA08754.1 integrase Not tested HPI Protein 5e-63 41
int CAB59974.1 integrase Not tested HPI Protein 7e-64 41
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 2e-71 41
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 2e-71 41
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 1e-65 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
intB NP_900321.1 prophage CP4-like integrase VFG0783 Protein 9e-87 48
intB NP_900321.1 prophage CP4-like integrase VFG0598 Protein 2e-86 48
intB NP_900321.1 prophage CP4-like integrase VFG1693 Protein 4e-80 46
intB NP_900321.1 prophage CP4-like integrase VFG0626 Protein 2e-79 45
intB NP_900321.1 prophage CP4-like integrase VFG1536 Protein 1e-74 45