|
Name : CV_4115 (CV_4115) Accession : NP_903785.1 Strain : Chromobacterium violaceum ATCC 12472 Genome accession: NC_005085 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 4455280 - 4457160 bp Length : 1881 bp Strand : - Note : identified by sequence similarity; ORF located using Blastx/COG1086 DNA sequence : ATGTTTGAAAAACTGCTAGCCTTCTCCCGCCACAACAAGATGGCGATGCTGGCGCTGATGGATGCGCTGCTGCTGCCGCT GGCCTTGTGGAGCGCGGTATTCCTGCGCCTGGGCGGCTATTGGGACCCGAAGCTCAACCCGCACCTGTGGATCTTCATCG TGCCGCCCTTGTGGGCGATTCCCATCTTCATCAAGCTGGGCCTGTACCGCGCGGTGCTGAAATACCTGGACGACAAGATC ATCTTCACTGTGTTCAGCGGCGTGACGCTGTCGGTGCTGGTGTTGCAGGCGGTGATACAGATGGCCCACATCTGGGCGAT GCCGCGCGCGTCGGTGATCATCTTCTGGGTGTTCGCGATGGCCTACATCGGCGGCAGCCGCTTCCTGCTGCGCGGCCTGG TGCGGCGCATCGACGCCACCGAAGCGCCGCGCGATCCGGTGATCATCTACGGCGCCGGCCAGGCCGGCGTGCAACTGATG CTGGCCCTGCAGGCCGGCCGCGAGTACCGGCCGATGGCCTTCGTCGACGACAATCCGGACCTGCGCCGCCGCACTTACCG CGGCGTGGCGGTGCACGCGCCGGAGGAGCTGCCGGCGCTGATCAAGGATACCCAGGCCAAGTGCATCCTGCTGGCGATGC CGTCTGTGGGACGAGGCCGCCAGCGCGAGATATTGGAGTCGCTGGAAAAGCTCAGGGTGCCGATCAAGCGCCTGCCCGGC ATGGCCGACCTGGTGTCCGGCGAGGCGCGGGTGGAGGAGTTGAAGGAAGTCGAGATCGAGGACCTGCTGGGTCGCGAGCC GGTGCCGCCCAAGACCGAGCTGCTGGCGCGCAATATCCGCGACAAGGTGGTGATGGTCACCGGGGCCGGCGGCTCCATCG GTTCCGAGCTGGCGCGGCAGATCGTCCGCAACCGTCCGGCGCGCATCGTGCTGTTCGAATTGTCGGAGTTCGCGCTGTAC AGCATAGACCAGGAGCTGGCGCAGATCGCGCCCAGGATTCCGCGCACGCCCATCCTGGGCTCGGTGACCGACTACGCCCG CCTGACTCAGGTGATGCGCGCCTTCCAGGTGGAAACGGTGTACCACGCCGCCGCCTACAAGCACGTGCCGATGGTGGAGC ACAACCCGGTGGCCGGCATCGTCAACAACGCCTTCGGCACCGATACCACGGCAAGAGCCGCCGAGGATTGCGGCGTCGAC ACCTTCGTGCTGATCTCCACCGACAAGGCCGTGCGCCCCACCAACGTGATGGGCGCCACCAAGCGGCTGGCCGAACTGAC CCTGCAGACCCGCCACGCGCGCGGCAGCCGCACCCGCTTCGTGATGGTGCGCTTCGGCAACGTGCTGGGCAGCTCCGGCT CCGTGGTGCCGCTGTTCCGTCGGCAGATCAAGGCCGGCGGCCCGATCACGCTGACCCACGCCGACATCACCCGCTACTTC ATGACGATACCGGAGGCGGCGCAGCTGGTGATCCAGGCCGGCGCGATGGGCGACGGCGGCGACGTGTTCGTGCTGGACAT GGGCGAGCCGGTGAAGATCATCGAATTGGCGCGGCGCATGGTGCACCTGTCCGGGCTGGAGGTGAAGGACGAGAACCAGC CGGGCGGCGACATCGAGATCCGCGTCACCGGCCTGCGTCCGGGCGAGAAGCTGTACGAGGAGCTGCTGATCGGCGACAAC GTGTTGCCGACCGACCACGCCCGCATCATGCGCGCGCAGGAATACCATTTGACCGAAGAGGAAATGGCGTCGCTGCTGGC GCGCCTGGCCGATGCCTGCCAGCGGCTGGACGCGCCGACGGCATTCGCGCTGATGCAGGAGGCGGTGCACGAGTTCCAGG CCGCCGAGGCCACCCAGGACTGGGTGGCGCTGCAGGGCTGA Protein sequence : MFEKLLAFSRHNKMAMLALMDALLLPLALWSAVFLRLGGYWDPKLNPHLWIFIVPPLWAIPIFIKLGLYRAVLKYLDDKI IFTVFSGVTLSVLVLQAVIQMAHIWAMPRASVIIFWVFAMAYIGGSRFLLRGLVRRIDATEAPRDPVIIYGAGQAGVQLM LALQAGREYRPMAFVDDNPDLRRRTYRGVAVHAPEELPALIKDTQAKCILLAMPSVGRGRQREILESLEKLRVPIKRLPG MADLVSGEARVEELKEVEIEDLLGREPVPPKTELLARNIRDKVVMVTGAGGSIGSELARQIVRNRPARIVLFELSEFALY SIDQELAQIAPRIPRTPILGSVTDYARLTQVMRAFQVETVYHAAAYKHVPMVEHNPVAGIVNNAFGTDTTARAAEDCGVD TFVLISTDKAVRPTNVMGATKRLAELTLQTRHARGSRTRFVMVRFGNVLGSSGSVVPLFRRQIKAGGPITLTHADITRYF MTIPEAAQLVIQAGAMGDGGDVFVLDMGEPVKIIELARRMVHLSGLEVKDENQPGGDIEIRVTGLRPGEKLYEELLIGDN VLPTDHARIMRAQEYHLTEEEMASLLARLADACQRLDAPTAFALMQEAVHEFQAAEATQDWVALQG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 7e-82 | 45 |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 5e-85 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CV_4115 | NP_903785.1 | polysaccharide biosynthesis protein | VFG0029 | Protein | 5e-126 | 52 |
| CV_4115 | NP_903785.1 | polysaccharide biosynthesis protein | VFG1300 | Protein | 9e-84 | 44 |
