|
Name : adi (CV_4040) Accession : NP_903710.1 Strain : Chromobacterium violaceum ATCC 12472 Genome accession: NC_005085 Putative virulence/resistance : Virulence Product : arginine decarboxylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : 4.1.1.19 Position : 4371548 - 4373806 bp Length : 2259 bp Strand : + Note : identified by sequence similarity; ORF located using GeneMark/Blastx/COG1982 DNA sequence : ATGCGTTTTCACTTCCCCATCGTGATCATCGACGAGGACTTCCGCTCGGAAAACACCAGCGGCTCCGGCATTCGCGAACT GGCCGCCGCCATGGAGGCGGAAGGCATGAGCGTGATCGGCTACACCAGCTACGGCGACCTCACCTCCTTCGCCCAGCAGC AAAGCCGCGCCGCCGGCTTCATCCTGTCGATAGACGACGAGGAATTCCAGACCGAGGACACGGCGCAAGAAGCGCTGGGC AATCTGTACGGCTTCGTCGCCGAAATCCGCCGCCGCAACCCGGACATCCCGGTCTACCTGTACGGCGAGACCCGCACCGC CCGCCACATCCCCAACGACATCCTGCGCGAGCTGCACGGCTTCATCCACATGCACGAGGACACGCCGGAGTTCGTCGCCC GCCACATCATCCGCGAGGCCAAGAGCTATCTGGACAAGCTGGCGCCGCCGTTCTTCCGCGCGCTGGTGGACTACGCCTAC GACGGCTCCTACTCCTGGCACTGCCCCGGCCACTCCGGCGGCGTCGCCTTCCTGAAGAGCCCGGTCGGCCAGATGTTCCA CCAGTTCTTCGGCGAGAACATGCTGCGCGCCGACGTCTGCAACGCGGTGGACGAGCTGGGCCAGCTGCTGGACCACACCG GCCCGGTGGCGGCGTCCGAGCGCAACGCGGCGCGCATCTTCAATGCCGACCACCTGTTCTTCGTCACCAACGGCACCTCC ACCTCGAACAAGATCGTCTGGCACAGCTGCGTCGCCGCCGGCGACATCGTGCTGGTGGACCGCAACTGCCACAAGTCCAA TCTGCACGCCATCATCATGACCGGGGCCATCCCGGTGTTCCTGATGCCGACGCGCAACCACTACGGCATCATCGGCCCGA TCCCGAAGTCCGAGTTCCAGCCGGACAATATCAAGAAGAAGATCCTGGCCAATCCGTTCGCGCGCGAGATGCTGGAAAAG CACCCCAACCGCAAGCCGCGCATCCTGACGCTGACCCAGTCCACCTACGACGGCATCCTGTACAACGTCGAGGAGATCAA GGGCCTGCTGGACGGCGAGGTGGACACGCTGCACTTCGACGAAGCCTGGCTGCCGCACGCCTGCTTCCACGACTTCTACC GCGACTTCCACGCCATCGGCGAAGGCCGGCCCCGCTGCGAGGACAGCCTGGTGTTCTCCACCCAGTCCACCCACAAGCTG TTGGCCGGCATCAGCCAGGCCTCGCAGATCCTGGTGCAGGATCCGCAGAACCGGCAGCTCGACACCGCCTGGTTCAACGA AGCCTACCTGATGCACACCTCGACCAGCCCGCAATACTCGATCATCGCCAGCTGCGACGTGGCCGCCGCGATGATGGAGC AGCCGGGCGGCCAGTCGCTGGTGGAAGAATCGCTGGTGGAGGCGATGGAATTCCGCCGCGCGATGCGCAAGGTGGACGAG GAATACGGCCGCGACTGGTGGTTCAGCGTATGGGGCCCGGACGATCTGTCCGACGACGGCATCTGCGACCAGACCGACTG GACGCTGCGCCCCGACGAGCGCTGGCACGGCTTCGCCGGCATCGAGGACGGCTTCAACATGCTGGACCCGATCAAGGCCA CCGTGCTGACGCCGGGCCTGGACGTGGACGGCAGCTTCGAGGAAATGGGCATCCCGGCCGCCATCGTCACCAAGTATCTG ACCGAACACGGCGTGGTCGTCGAGAAAACCGGCCTGTACAGCTTCTTCATCATGTTCACCATCGGCATCACCAAGGGCCG CTGGAACACGCTGATCTCGCTGCTGCAGCAGTTCAAGGACGATTTCGACAAGAACCAGCCGATGTGGCGCGTGATGCCGG AATTCGTCGCCAAGCATCCGCAGTACGAGCGCGTCGGCCTGCAGGACCTGTGCCAGCGCATCCACGGCCTGTACGCCAAG CACGACGTGGCGCGGCTGACCACCGACATCTACCTGTCCGACATGGAGCCGGCGATGCGCCCGGCCGACGCCTTCGCCAA GATGGCGCACCGCGAGATCGAGCGCGTGCCGGTGGACCAGCTGGAAGGCCGCGTCACCGCGGTGCTGCTGACCCCCTACC CGCCGGGCATCCCGCTGCTGATCCCGGGCGAGCGCTTCAACAAGACCATCGTCGACTACCTGCGCTTCGCCCAGGCCTTC AACCGCGAGCTGCCGGGCTTCGAAACCGACGTCCACGGCCTGGTGGCGGTGGAGGTGCAGGACCGCAAGGTGTACTGCGT GGACTGCGTCAAGCAATAA Protein sequence : MRFHFPIVIIDEDFRSENTSGSGIRELAAAMEAEGMSVIGYTSYGDLTSFAQQQSRAAGFILSIDDEEFQTEDTAQEALG NLYGFVAEIRRRNPDIPVYLYGETRTARHIPNDILRELHGFIHMHEDTPEFVARHIIREAKSYLDKLAPPFFRALVDYAY DGSYSWHCPGHSGGVAFLKSPVGQMFHQFFGENMLRADVCNAVDELGQLLDHTGPVAASERNAARIFNADHLFFVTNGTS TSNKIVWHSCVAAGDIVLVDRNCHKSNLHAIIMTGAIPVFLMPTRNHYGIIGPIPKSEFQPDNIKKKILANPFAREMLEK HPNRKPRILTLTQSTYDGILYNVEEIKGLLDGEVDTLHFDEAWLPHACFHDFYRDFHAIGEGRPRCEDSLVFSTQSTHKL LAGISQASQILVQDPQNRQLDTAWFNEAYLMHTSTSPQYSIIASCDVAAAMMEQPGGQSLVEESLVEAMEFRRAMRKVDE EYGRDWWFSVWGPDDLSDDGICDQTDWTLRPDERWHGFAGIEDGFNMLDPIKATVLTPGLDVDGSFEEMGIPAAIVTKYL TEHGVVVEKTGLYSFFIMFTIGITKGRWNTLISLLQQFKDDFDKNQPMWRVMPEFVAKHPQYERVGLQDLCQRIHGLYAK HDVARLTTDIYLSDMEPAMRPADAFAKMAHREIERVPVDQLEGRVTAVLLTPYPPGIPLLIPGERFNKTIVDYLRFAQAF NRELPGFETDVHGLVAVEVQDRKVYCVDCVKQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 1e-101 | 42 |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 3e-109 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| adi | NP_903710.1 | arginine decarboxylase | VFG1670 | Protein | 7e-102 | 42 |
