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Name : gabD (CV_3927) Accession : NP_903597.1 Strain : Chromobacterium violaceum ATCC 12472 Genome accession: NC_005085 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase [NAD(P)] Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 4242615 - 4244075 bp Length : 1461 bp Strand : + Note : identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1012 DNA sequence : ATGTTGAATCTGCAAGACCCCTCGCTGCTGCGCCAGCAATGCTATCTGGGCGGCGAATGGCTGGATGCCGACGGCGGCCA GCACATCGCGGTCCACAACCCGGCCACCGGCGAGAAAATCGGCCAAGTGCCCAAGATGGGCGCCGCCGAAGCCGAACGCG CGGTGGCCGCCGCCGCCCGCGCCTTCCCAGCCTGGAAAGCCAAGAGCGCCAAGGAGCGCGCCGCCATCCTGCGCCGCTGG TTCGACCTGATCATCGCCCACCAGCAAGACCTGGCGATAATCCTGACCTCCGAGCAAGGCAAACCGCTGGCCGAAGCCAA GGGCGAGATCGCCTACGGCGCCAGCTACATCGAGTGGTACGCCGAGGAGGCCAAGCGGGTTTACGGCGACATCGTGCCCG GTCCCGCCGGCGACCGCCGCGTGCTGGTGACCAAGGAGCCGATAGGCGTCACCGCCGCCATCACGCCGTGGAACTTCCCC AGCGCGATGATCACGCGCAAGGCCGCGCCGGCGCTGGCCGCCGGCTGCACCATGGTGGTCCGCCCGGCCAGCCAGACCCC GCTATCGGCGCTGGCGCTGGCCGAGCTGGCCGAGCGCGCCGGCATCCCGGCCGGCGTGTTTTCGGTGATCACTGGCGGCT CCAGCGAAATCGGCGCGGTGCTGACCGGCAGCGACACGGTGAAGAAATTCTCCTTCACCGGCTCCACCGAAGTCGGCCGC AAGCTGATCGCCCAATGCGCCGGCACGGTGAAAAAGGTATCGATGGAGCTTGGCGGCAACGCGCCCTTCATCGTGTTCGA CGACGCCGATCTGGACGCCGCGGTGGAAGGCGCGCTGATCTCCAAGTACCGCAACGCCGGCCAGACCTGCGTCTGCGCCA ACCGCATCTACGTGCAGGACGGCGTCTACGACGCCTTCGCCGAGAAATTCGCCGCCGCCGTCGCCACCCTGAAGGTGGGC AACGGCCTGGAGGCCGGCGTCAGCCAGGGGCCGCTGATCGACCACAACGCGGTGGCCAAGGTGGAAGAGCACATCGCCGA CGCGCTGGCCAAAGGCGGCCGACTGATCGCCGGCGGCAAGCGCCACGCGCTGGGCCACACCTTCTTCGAGCCGACGCTGA TCGCCGACGTCACCCGCGACATGAAGGTGGCGCGCGAAGAGACCTTCGGCCCGCTGGCGCCGCTGTTCCGCTTCAAGACC GAGGAAGAAGCGATCCGCCTGGCCAACGACACCGAGTTCGGCCTGGCCAGCTATTTCTACGCCCGCGATGTCGGCCGCAT CTTCCGCGTCGCCGAAGGCCTGGAGTACGGCATGGTGGCAGTCAATAGCGGCCTGCTGTCCAACGAGGCGGCGCCGTTCG GCGGCGTCAAGCAATCCGGCCTGGGCCGCGAGGGCTCAAAGTACGGCATCGAGGACTATCTGGAAATCAAATACGTGCTG CTGGGCGGGCTGGATCGCTGA Protein sequence : MLNLQDPSLLRQQCYLGGEWLDADGGQHIAVHNPATGEKIGQVPKMGAAEAERAVAAAARAFPAWKAKSAKERAAILRRW FDLIIAHQQDLAIILTSEQGKPLAEAKGEIAYGASYIEWYAEEAKRVYGDIVPGPAGDRRVLVTKEPIGVTAAITPWNFP SAMITRKAAPALAAGCTMVVRPASQTPLSALALAELAERAGIPAGVFSVITGGSSEIGAVLTGSDTVKKFSFTGSTEVGR KLIAQCAGTVKKVSMELGGNAPFIVFDDADLDAAVEGALISKYRNAGQTCVCANRIYVQDGVYDAFAEKFAAAVATLKVG NGLEAGVSQGPLIDHNAVAKVEEHIADALAKGGRLIAGGKRHALGHTFFEPTLIADVTRDMKVAREETFGPLAPLFRFKT EEEAIRLANDTEFGLASYFYARDVGRIFRVAEGLEYGMVAVNSGLLSNEAAPFGGVKQSGLGREGSKYGIEDYLEIKYVL LGGLDR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 1e-143 | 66 |
| cur_1509 | YP_001800903.1 | NAD-dependent aldehyde dehydrogenase | Not tested | Not named | Protein | 1e-76 | 41 |
