|
Name : pilB (CV_3828) Accession : NP_903498.1 Strain : Chromobacterium violaceum ATCC 12472 Genome accession: NC_005085 Putative virulence/resistance : Virulence Product : type 4 fimbrial biogenesis protein Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 4125777 - 4127483 bp Length : 1707 bp Strand : - Note : identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2804/TC:3.A.15.1.1 DNA sequence : ATGGAAGCTACGGCAGGAATTTCCGGCCTGGGCAGAGCCCTGGTTCAGCACAATATGCTATTGCAGCAAGATGCGGATGC CATCTCAAAACAGGCGACGACGTCGCATCTCAGCTTCGTCGAGCAACTGATCCAGAGCAAGAAGATGACGTCGCGCGATA TCGCGATGTTTTCATCGCGGGTTTTCGGCTATCCGCTGCTGGATTTGGCTTCGCTGGACACCGAACAATTGCCCAAAGGG TTGGTGGACGACGAGGTGATCGCCAGCCGCCGCCTTTTGCCGTTGCTGAAGCGCGGCAACAAGCTGTATATCGGCACTTC CGATCCTACCCAGACCTCGGCCTATCATGCGATCACCTTCAAGACCGGCTTGACGGTCGAGGTGGTGGTGGTGGAAGAGG ACAAGCTGTCCAAGCTGATCGGCCGTTACCAGGACAATTCGACCTCGGCTTTGAAGGAGCTGGAGAGCGAGGACTTCGGC GACCTGGAGTTCGCCGATCCGGACGCCCAGCTCGACAGCGGCCCGCAGACCGAGGTCGACGACGCGCCGGTGGTCAAGTT CATTCACAAGATGCTGCTGGACGCGATAGGCATCGGCGCGTCCGACATCCACTTCGAACCTTACGAGAAATATTACCGCA TCCGCTACCGAGTGGACGGCGTGCTGAAGGAGGTGGCGCAGCCGCCCTTGCTGCTGAAGGAAAAGATCGCCTCCCGCATC AAGGTGATTTCCAGGCTGGACATTTCGGAAAAGCGCTTGCCGCAGGATGGCCGCTTGAAGCTGGTGATTTCCAAGACCCG GGCGATAGATTTCCGCGTCAGCACGCTGCCCACGCTGTACGGCGAGAAGATCGTCATGCGTATCCTGGACTCGTCCGGCG CCTCGCTGGATATCGACCAGCTGGGTTTCGAGCCGGAGCAGAAGGCGCATCTGCTGAAGGCGATCGCCAGGCCGTACGGC ATGGTGCTGGTGACCGGTCCGACGGGCAGCGGCAAGACTGTGTCGCTGTACACCTGCCTGAACATCCTGAACAAGCCGGA CACCAATATCTCCACGGCGGAGGATCCGGTTGAAATCAACCTTCCCGGCATCAACCAAGTCAACGTCAACGAGAAGGCCG GGCTGACCTTCGCGTCGGCGCTGAAAGCCTTCTTGCGGCAGGATCCGGACGTGATCATGGTCGGCGAAATCCGCGATTTC GAAACCGCCGACATCGCCATCAAGGCGGCTCAGACCGGCCACATGGTGTTTTCCACGCTGCATACCAATGACGCCCCGTC CACGCTGACCCGGATGCTGAATATGGGCGTGGCGCCGTTCAACATCGCCAGTTCGGTGTTGCTGATCATGGCGCAGCGCC TGGCGCGCCGCTTGTGCAGCCATTGCAAGCAGCCGGTGGAGATCCCGAAGGAAGCGCTGCTGCGCGCGGGTTTTACCAAA GAGGACCTGGCGGGCGGCTGGCATCCGTACGGGCCGGTTGGCTGCGAGGAGTGCCGGAATACCGGCTACAAAGGCCGGGT CGGCATTTTCGAAGCCATGCCGATCAGCGACGCGATGATGCGCTTGATCATGAAGAACGGCACCTCGGTCGACATCTCCG ATCTGGCCAAGGAGGAGGGCATGGTCGATCTGCGCCGCGCCGGCCTGTTGAAGGTGATGAGCGGAGTGACTTCGCTGGCC GAGGTCGAAGCGGTAACCAACGATTGA Protein sequence : MEATAGISGLGRALVQHNMLLQQDADAISKQATTSHLSFVEQLIQSKKMTSRDIAMFSSRVFGYPLLDLASLDTEQLPKG LVDDEVIASRRLLPLLKRGNKLYIGTSDPTQTSAYHAITFKTGLTVEVVVVEEDKLSKLIGRYQDNSTSALKELESEDFG DLEFADPDAQLDSGPQTEVDDAPVVKFIHKMLLDAIGIGASDIHFEPYEKYYRIRYRVDGVLKEVAQPPLLLKEKIASRI KVISRLDISEKRLPQDGRLKLVISKTRAIDFRVSTLPTLYGEKIVMRILDSSGASLDIDQLGFEPEQKAHLLKAIARPYG MVLVTGPTGSGKTVSLYTCLNILNKPDTNISTAEDPVEINLPGINQVNVNEKAGLTFASALKAFLRQDPDVIMVGEIRDF ETADIAIKAAQTGHMVFSTLHTNDAPSTLTRMLNMGVAPFNIASSVLLIMAQRLARRLCSHCKQPVEIPKEALLRAGFTK EDLAGGWHPYGPVGCEECRNTGYKGRVGIFEAMPISDAMMRLIMKNGTSVDISDLAKEEGMVDLRRAGLLKVMSGVTSLA EVEAVTND |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-82 | 44 |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 4e-82 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pilB | NP_903498.1 | type 4 fimbrial biogenesis protein | VFG0233 | Protein | 3e-147 | 59 |
| pilB | NP_903498.1 | type 4 fimbrial biogenesis protein | VFG0112 | Protein | 9e-155 | 57 |
| pilB | NP_903498.1 | type 4 fimbrial biogenesis protein | VFG1880 | Protein | 6e-142 | 53 |
| pilB | NP_903498.1 | type 4 fimbrial biogenesis protein | VFG2048 | Protein | 5e-83 | 45 |
| pilB | NP_903498.1 | type 4 fimbrial biogenesis protein | VFG1876 | Protein | 3e-78 | 45 |
| pilB | NP_903498.1 | type 4 fimbrial biogenesis protein | VFG0182 | Protein | 3e-83 | 45 |
