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Name : CV_3813 (CV_3813) Accession : NP_903483.1 Strain : Chromobacterium violaceum ATCC 12472 Genome accession: NC_005085 Putative virulence/resistance : Virulence Product : type II secretion system protein Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 4110296 - 4111756 bp Length : 1461 bp Strand : - Note : identified by sequence similarity; ORF located using Glimmer/Blastx/COG2804 DNA sequence : ATGATGCAAGCCAAGTTCTCGACGCTGCTGCCCTTTCCCTTCGCCCGCGCCAACGGCGTCATCCTGCTGGACGGCGAGGC GGGGCGGGTGCTGCTGCTGCGCGAGGATGCCAAGCCGGCGGCATGGGGCGAGGCGCTGCGGGTGCATGGCGGCCAGCTGT CCGGCGTGGAGACGCTGACGGCCGCCCAGTTCGAGAAGCGCCTGTCCGAGCATTACGCCAGCCGCGACGGCGCGGCGGCG GAAATGGTGGACGACATCGGCCAGGACCTGGATCTGAACCAGATGGTGGAGTCGCTGCCCACCGTCGAGGATCTGCTGGA GAGCGAGGGCGACGCCCCCATCATCCGCATGATCAACGCGCTGCTGACCCAGGCGCTGCGAGACGGCGCGTCCGACATCC ACATCGAGGCGTTCGAGGACCGCTCGGTGGTGCGCTTCCGGCTGGACGGCACGCTGCGCGACGTGGTCAGCCCGCATCGC GCCCTGCACGCGGCGATGGTGTCGCGGATCAAGATCATGGCCAACCTGGACATCGCCGAGAAGCGCATCCCGCAGGACGG CCGCATCTCGCTGCGCCTGGGCGGCCGGCCGGTGGACGTGCGCGTGTCGACGCTGCCCACCAGCCACGGCGAGCGGGTGG TGCTGCGCCTGTTGGACAAGGAGAACGCCAAGCTCGACCTGGCCACGCTGGGCATGGCCGCCGACACGCTGGCCTCAGTG GACAAGCTGATCCGCCAGCCGCACGGCATCCTGCTGGTGACCGGCCCCACCGGCTCCGGCAAGACCACGACCTTGTACGC CGCCCTGTCGCGGCTGGACGCCAGCCACACCAACATCATGACGGTGGAGGACCCGGTGGAGTACCACCTGGACGGCGTCG GCCAGACCCAGGTCAACGCCCGCATCGACATGACCTTCGCCAAGGCGCTGCGCGCGATCCTGCGCCAGGACCCGGATGTG GTGATGATAGGCGAGATCCGCGACCTGGAAACCGCGCAGATCGCGGTGCAGGCGTCCTTGACCGGCCACCTGGTGTTGGC CACGCTGCACACCAACGACGCCGCCAGCGCCGTCACCCGCCTCACCGACATGGGCGTCGAGCCCTTCCTGCTGGCGTCCA GCCTGCTGGGCGTGATGGCGCAGCGGCTGGTGCGCCGCGTCTGCCCGCAGTGCAAGGCGCCGCACCCGGTGCCGCTGGAA GACGCGCCGGAAGTTGTCCATTACCGGCCGGTGGGCTGCCCGGCTTGCGGCCAGTCTGGTTACAAGGGCCGCTACGGCAT CTACGAATTGATGCTGGTCGACGACACCATGCAGCGGCTGATCCATGATCGCGCGTCCGAGCACAGGCTGCGCGACCACG CCGACCGCCACGGCATGCGCAGCCTGCGCGACGACGGCATGCGCTGGGTCAAGGCCGGCGAGACCAGCCTGGAAGAAATC CTGCGGGTGACGAGGAGCTGA Protein sequence : MMQAKFSTLLPFPFARANGVILLDGEAGRVLLLREDAKPAAWGEALRVHGGQLSGVETLTAAQFEKRLSEHYASRDGAAA EMVDDIGQDLDLNQMVESLPTVEDLLESEGDAPIIRMINALLTQALRDGASDIHIEAFEDRSVVRFRLDGTLRDVVSPHR ALHAAMVSRIKIMANLDIAEKRIPQDGRISLRLGGRPVDVRVSTLPTSHGERVVLRLLDKENAKLDLATLGMAADTLASV DKLIRQPHGILLVTGPTGSGKTTTLYAALSRLDASHTNIMTVEDPVEYHLDGVGQTQVNARIDMTFAKALRAILRQDPDV VMIGEIRDLETAQIAVQASLTGHLVLATLHTNDAASAVTRLTDMGVEPFLLASSLLGVMAQRLVRRVCPQCKAPHPVPLE DAPEVVHYRPVGCPACGQSGYKGRYGIYELMLVDDTMQRLIHDRASEHRLRDHADRHGMRSLRDDGMRWVKAGETSLEEI LRVTRS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 3e-120 | 58 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-120 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CV_3813 | NP_903483.1 | type II secretion system protein | VFG0182 | Protein | 3e-128 | 58 |
| CV_3813 | NP_903483.1 | type II secretion system protein | VFG2048 | Protein | 8e-120 | 57 |
| CV_3813 | NP_903483.1 | type II secretion system protein | VFG1876 | Protein | 4e-127 | 53 |
| CV_3813 | NP_903483.1 | type II secretion system protein | VFG2426 | Protein | 8e-78 | 49 |
| CV_3813 | NP_903483.1 | type II secretion system protein | VFG0112 | Protein | 1e-85 | 47 |
| CV_3813 | NP_903483.1 | type II secretion system protein | VFG1880 | Protein | 7e-84 | 42 |
