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Name : hofF (CV_3812) Accession : NP_903482.1 Strain : Chromobacterium violaceum ATCC 12472 Genome accession: NC_005085 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 4109085 - 4110296 bp Length : 1212 bp Strand : - Note : identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1459/TC:3.A.15.1.1 DNA sequence : ATGGCGGCGTTCAAGTACACCGCCTACGACGCGGCGGGCAAGGAGCAGAGCGGGCTGCTGGAGGCCGACTCCGCGCGCGC CGCGCGCGCGCAGCTCAGGGAGCGCGGCCTGCTGCCGGTCACCGTGGACGGCGTCAGCGCCAAGACCGGCGGCGCCGGCA GCAATGTGTTGCGCCGCGGCCTGCCGCGCGCCGAGCTGGTGATGATCACCGAGCAGCTGTCGACGCTGCTCAACGCCGGC CTGACGCTGGAAAAGGCGTTGACCGCGGTGACCGAGCAATCGGAAAACGCCCGCAGCCGCACCGTGCTGGCGGCGCTGCG CAGCGACATCCTGGAAGGCAAGGGCTTCGCCCAGGCGCTGTCGTCGGCGCCCGGCGTGTTCTCGCCGCTGTACCGCTCGC TGGTGCAGGCCGGCGAACAATCCGGCCACCTGGACATGGTGATGTCGCGGCTGGCCGAATACCTGGACAAGCGGCAGAAC ACCCAGCAGAAAGTGACGCTGGCGCTCGCCTATCCGGCGGTGGTGACGCTGGTGGCCATCCTGGTGGTGGCCGGCCTGAT GAGCTACGTGGTGCCGCAGGTGGTCAGCGTGTTCGCCCAGACCAAGCAGAGCCTGCCTTTCCTGACCCGCGCGCTGGTGG CCTGCAGCGATTTCCTGCGCCAGTGGGGCGTGGCGCTGCTGATCGGCATCGCCGCCGCGGCGTTCCTGATCGTCCGCGCC CTGCGCGCGCCGGCGCTGAAGCGGCGCTTCCACGCCAGGGTGCTGAAGCTGCCGGTGTTCGGCCGGCTGTTCCGCGCGCT CAACACCGCGCGCATGGCCAGCACCCTGTCCATCCTGGTCGGCTCCGGCGTGCCGCTGCTGACCGCGCTGGAGACGGCGC GCGGCCTGATGACCATGCTGCCGATGCAGGACGCGGTGGCCGATGCGATGGCCAAGGTGCGCGAGGGTGTGTCCTTGTCG CGCGCGCTCAATGCCAGCCGCCAGTTCCCGCCGGTGCTGATCCACCTGATTTCCAGCGGCGAGGCCAGCGGCACCTTGTC CCACATGCTGGACCGCGCCGCCCAGCAGCAGGAGCAGGAGGTGGAGCGCAAGCTGGCCACCTTCACCACGCTGATGGAGC CGCTGCTGATCCTGGTGATGGGCGGCATGGTGCTGTTGATCGTGCTGGCCATCATGATGCCCATCATCGACATGAACCAG ATGGTGCATTGA Protein sequence : MAAFKYTAYDAAGKEQSGLLEADSARAARAQLRERGLLPVTVDGVSAKTGGAGSNVLRRGLPRAELVMITEQLSTLLNAG LTLEKALTAVTEQSENARSRTVLAALRSDILEGKGFAQALSSAPGVFSPLYRSLVQAGEQSGHLDMVMSRLAEYLDKRQN TQQKVTLALAYPAVVTLVAILVVAGLMSYVVPQVVSVFAQTKQSLPFLTRALVACSDFLRQWGVALLIGIAAAAFLIVRA LRAPALKRRFHARVLKLPVFGRLFRALNTARMASTLSILVGSGVPLLTALETARGLMTMLPMQDAVADAMAKVREGVSLS RALNASRQFPPVLIHLISSGEASGTLSHMLDRAAQQQEQEVERKLATFTTLMEPLLILVMGGMVLLIVLAIMMPIIDMNQ MVH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 4e-48 | 42 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-48 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hofF | NP_903482.1 | general secretion pathway protein F | VFG0181 | Protein | 1e-69 | 44 |
| hofF | NP_903482.1 | general secretion pathway protein F | VFG2049 | Protein | 2e-47 | 42 |
