Gene Information

Name : fliP (CV_3127)
Accession : NP_902797.1
Strain : Chromobacterium violaceum ATCC 12472
Genome accession: NC_005085
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 3412846 - 3413598 bp
Length : 753 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGAAGAAAAAGATCGTGATCGCCCTGCTGTCCGGCGGGGCGCTGCTGTCGCCGTTGCTGGCGGACGCCGCGGCGGGCTT
GCCGCTGATGACCAGCACGCCGGCGGCGGGCGGCGGGCAGAACTACTCGCTCAGCCTGCAGATGCTGCTGTTCATGACGG
CGCTGACCTTCATCCCGGCGATGATGCTGATGATGACGGCGTTCACCCGCATCGTGATCGTGCTGTCGCTGCTTCGCCAG
GCCTTGGGCACCACCCAGTCGCCGCCCAACCAGGTGATCGTCGGCCTGGCGCTGTTTCTGACGCTGTTCGTGATGGGGCC
GACTTTCGACCAGGTCTACGCCAAGGCCTGGGTGCCGTTCTCCGACGACAAGATCAGCTTCAACCAGGCGCTGGACGAGG
GCAGCAAGCCGATGAAGGCTTTCATGCTGCGCCAGACGCGAGAGAAGGATCTGGCCTTCTTCATCGAGATTTCGCAGTCG
CCGAAGCCGCAGAGCAAGGAGGAGGTGTCGATGAAGACGCTGATTCCGGCTTTCGCCGTCAGCGAGTTGAAAACCGCTTT
CCAGATCGGTTTCATGATCTTCATTCCCTTCATGATCATCGACCTCGTCGTCGCCAGCATCCTGATGGCGATGGGCATGA
TGATGGTTTCGCCGGTGACCATTTCCTTGCCGTTCAAGATGATGCTGTTCGTGCTGGTGGACGGGTGGACGCTGCTGATG
GGCTCGCTGGTGCAGAGTTTCTACACGGGATGA

Protein sequence : 
MKKKIVIALLSGGALLSPLLADAAAGLPLMTSTPAAGGGQNYSLSLQMLLFMTALTFIPAMMLMMTAFTRIVIVLSLLRQ
ALGTTQSPPNQVIVGLALFLTLFVMGPTFDQVYAKAWVPFSDDKISFNQALDEGSKPMKAFMLRQTREKDLAFFIEISQS
PKPQSKEEVSMKTLIPAFAVSELKTAFQIGFMIFIPFMIIDLVVASILMAMGMMMVSPVTISLPFKMMLFVLVDGWTLLM
GSLVQSFYTG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 9e-29 46
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-26 46
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-27 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-27 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-27 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-23 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 5e-27 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 5e-27 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 6e-21 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 6e-21 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 6e-21 41
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 4e-26 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-27 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-27 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 6e-15 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 5e-15 41
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-25 41
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP NP_902797.1 flagellar biosynthesis protein FliP VFG2494 Protein 4e-59 65
fliP NP_902797.1 flagellar biosynthesis protein FliP VFG2338 Protein 7e-60 64
fliP NP_902797.1 flagellar biosynthesis protein FliP VFG1259 Protein 3e-53 60
fliP NP_902797.1 flagellar biosynthesis protein FliP VFG2016 Protein 6e-53 57
fliP NP_902797.1 flagellar biosynthesis protein FliP VFG0394 Protein 3e-26 47
fliP NP_902797.1 flagellar biosynthesis protein FliP VFG0188 Protein 8e-29 46
fliP NP_902797.1 flagellar biosynthesis protein FliP VFG0519 Protein 7e-28 43
fliP NP_902797.1 flagellar biosynthesis protein FliP VFG0044 Protein 3e-25 43