Gene Information

Name : CV_2963 (CV_2963)
Accession : NP_902633.1
Strain : Chromobacterium violaceum ATCC 12472
Genome accession: NC_005085
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3242364 - 3243056 bp
Length : 693 bp
Strand : -
Note : identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1136

DNA sequence : 
ATGAATAAGGTATTGAGCTGCCGCTCGCTCGGCAAACGCTACCAGGAGGGCAAGCTGGCGCTGGACGTGCTGTCCGGCGT
CGATCTGGAGGTGGGCAAGGGCGAGCATCTGGCCATCGTCGGCGCGTCCGGCTCCGGCAAGAGCACGCTGCTGCACCTGT
TGGGCGGCCTGGATACGCCGACCGCCGGCACGGTGGAGGTGTTGGGGCGCGATCTGTCCAAGCTGTCCGAGACCGAGCGC
GGCAAGCTGCGCAACGAGTCCATGGGCTTCGTCTACCAGTTCCACCACCTGCTGCCGGAATTCACCGCGCTGGAAAACGT
GATGATGCCGCTGCTGATCCGCCGCATGGACAAGGGCGAGGCCGCCCGCCGCGCCGCCGAGATGCTGGAGCGGGTGGGAT
TGGGCAAGCGCCTGGAGCACAAGCCGGGCGAATTGTCCGGCGGCGAGCGCCAGCGCGCCGCCATCGCCCGCGCGCTGGTG
ACGCAGCCGGCCTGCCTGCTGGCGGACGAGCCCACCGGCAATCTGGACGCCCATACCGCGAGCCAGGTGTTCGAGCTGAT
GCTGGAGCTGAACCGCACCCTGGGCACCAGCCTGATCATCGTCACCCACGACCTGGAACTGGCCGGCCGCACCCAGCGGG
TGCTGCGCCTGAACGAAGGCCGGCTGGCGGTGTCGGATACCGTTTCTGCCTGA

Protein sequence : 
MNKVLSCRSLGKRYQEGKLALDVLSGVDLEVGKGEHLAIVGASGSGKSTLLHLLGGLDTPTAGTVEVLGRDLSKLSETER
GKLRNESMGFVYQFHHLLPEFTALENVMMPLLIRRMDKGEAARRAAEMLERVGLGKRLEHKPGELSGGERQRAAIARALV
TQPACLLADEPTGNLDAHTASQVFELMLELNRTLGTSLIIVTHDLELAGRTQRVLRLNEGRLAVSDTVSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-27 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-29 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-29 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 6e-29 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CV_2963 NP_902633.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 2e-34 48
CV_2963 NP_902633.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 6e-39 42
CV_2963 NP_902633.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 7e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CV_2963 NP_902633.1 ABC transporter ATP-binding protein VFG2059 Protein 3e-12 41