Gene Information

Name : escR (CV_2607)
Accession : NP_902277.1
Strain : Chromobacterium violaceum ATCC 12472
Genome accession: NC_005085
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 2816468 - 2817118 bp
Length : 651 bp
Strand : +
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGTCCTTACTAGACCAACCGCTGCAATTAATCGTCTTGCTGTTCGCTCTGTCCATTCTGCCGCTACTGGTTGTACTGGG
CACTTCGTTTCTCAAGCTGGCCGTTGTGTTCGCGCTGCTGCGCAACGCATTGGGCATCCAGCAGATTCCGCCCAATATCG
CCCTGTACGGGCTGGCGCTGATTTTGACCTTGTTCATCATGGCGCCGATAGGCTTGGAGATTCAGGACAATCTGATCGCC
CACCCGATCAAGATCGAATCCCCAGCCTTCATCCAGCAGGTCGAATCTGGTGTCTTCACCCCGTACCGCGTATTCCTGGA
ACGCAACACCGCTCCGGAACAGGTGCACTTCTTCGCCGACATCGGCCATCAGATCTGGCCTGAGAAATACCAGCAGAGGA
TTCCTGACAATTCGCTGCTGGTGCTGATGCCGGCCTTCACCGTGAGCCAGCTGATCGAAGCGTTCAAGATCGGCTTGCTG
CTGTTTCTGCCCTTCGTCGCGATAGATCTGGTGGTATCCAACGTGCTGCTGGCCATGGGCATGATGATGGTATCGCCGAT
GACCATATCCATGCCGCTGAAACTGTTGGTTTTCGTTCTGATGAACGGCTGGGAAAAGTTGCTGGGCCAGCTGGTTCTTT
CTTTTTCCTGA

Protein sequence : 
MSLLDQPLQLIVLLFALSILPLLVVLGTSFLKLAVVFALLRNALGIQQIPPNIALYGLALILTLFIMAPIGLEIQDNLIA
HPIKIESPAFIQQVESGVFTPYRVFLERNTAPEQVHFFADIGHQIWPEKYQQRIPDNSLLVLMPAFTVSQLIEAFKIGLL
LFLPFVAIDLVVSNVLLAMGMMMVSPMTISMPLKLLVFVLMNGWEKLLGQLVLSFS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-65 66
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 3e-57 59
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 3e-57 59
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-57 59
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 9e-57 58
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 9e-57 58
lscR AAO18040.1 LscR Virulence TTSS locus Protein 5e-55 57
escR AAK26700.1 EscR Virulence LEE Protein 1e-50 54
escR AAL57527.1 EscR Virulence LEE Protein 1e-50 54
escR CAC81847.1 EscR protein Virulence LEE II Protein 1e-50 54
escR CAI43889.1 EscR protein Virulence LEE Protein 1e-50 54
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-50 54
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-50 54
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 8e-50 53
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-50 53
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-50 53
escR AAC38369.1 EscR Virulence LEE Protein 1e-49 53
escR AAC31528.1 L0049 Virulence LEE Protein 2e-50 53
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-50 53
unnamed AAL06354.1 EscR Virulence LEE Protein 9e-51 53
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-49 51
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-49 51
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-38 46
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-38 46
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-38 46
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 5e-41 46
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 7e-38 46
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 7e-38 46
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 1e-38 45
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 5e-39 45
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 1e-36 45
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 1e-36 45
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 3e-40 44
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 4e-38 43
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 8e-38 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 6e-38 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 8e-38 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 3e-38 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-37 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-37 42
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 1e-36 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-38 42
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 6e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
escR NP_902277.1 type III secretion system protein VFG0519 Protein 9e-58 59
escR NP_902277.1 type III secretion system protein VFG0394 Protein 4e-53 54
escR NP_902277.1 type III secretion system protein VFG0044 Protein 9e-47 53
escR NP_902277.1 type III secretion system protein VFG0188 Protein 4e-55 53
escR NP_902277.1 type III secretion system protein VFG0715 Protein 5e-50 53
escR NP_902277.1 type III secretion system protein VFG0827 Protein 8e-51 53
escR NP_902277.1 type III secretion system protein VFG2338 Protein 4e-27 42
escR NP_902277.1 type III secretion system protein VFG2455 Protein 2e-34 42
escR NP_902277.1 type III secretion system protein VFG1012 Protein 3e-36 41
escR NP_902277.1 type III secretion system protein VFG1259 Protein 7e-29 41
escR NP_902277.1 type III secretion system protein VFG2494 Protein 5e-31 41