|
Name : escV (CV_2602) Accession : NP_902272.1 Strain : Chromobacterium violaceum ATCC 12472 Genome accession: NC_005085 Putative virulence/resistance : Virulence Product : secretion system apparatus protein SsaV Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 2811208 - 2813259 bp Length : 2052 bp Strand : + Note : with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system DNA sequence : ATGAACCAGATCAAATCCTTCCTGATGATGGCGGCCGGGCGACAGGATATCGTCCTGGCGGTCATGCTGCTGGTGGCCGT GTTCATGATGATCATTCCATTGCCTACCGGCCTGGTGGACTTCATGATCGCGCTCAATCTGATGATCGCCGTCATCCTGC TGATGATGTCGCTGTACATCCGGGAGCCGCTGGAATTTTCAGCCTTCCCCTCGGTATTGCTGATCACCACCCTGTACCGC TTGGCGCTGACCATCAGCACCACCCGGCTGATCCTGCTGCAAGCAGACGCCGGTGAAATCGTCTACACCTTCGGCAGTTT CGCGGTGGGCGGCAACCTCGGCGTGGGCTTGATCGTATTCGTGATCATCACCGTGGTGCAATTCATCGTCATCACCAAGG GTTCGGAGCGGGTGGCGGAGGTCAGCGCCCGCTTCTCGCTAGACGCCATGCCCGGCAAGCAGATGAGCATAGACGGCGAC ATGCGCGCCGGGGTCATAGACGCCAACGAGGCGCGCCGCCTGCGCGGACTGGTGCAAAAGGAAAGCCAGCTGTACGGCGC GATGGATGGTGCGATGAAATTCGTCAAGGGCGACGCCATCGCCGGCATCATCATCATCCTGGTGAACATCCTGGGCGGCA CCGCCATCGGCGTGATGATGCACGGCATGAGCGCGAGCGCGGCCCTGTCCACCTATGCCATCCTGTCGATCGGCGATGGT TTGATCGGCCAGATACCGGCGCTGCTGATTTCCATCACCGCCGGCACCATCGTGACCCGGGTGCCGGGCGAGCAAAGACT GAACCTGGCCAGCGATTTGACCGACCAGATCGGCAAACAGCCGCAGGCCCTGCTGCTGGCCGCGTCGGTGCTGCTGGTTT TCGCGCTGATTCCCGGCTTCCCAGCCATCTACTTCATCATTCTCGCCGCGATGGTCAGCGCCGCCGCATGGTGGGTGAAA AAGCGCAAGCGTGCCGCCAGGAGCGACTCCACGGGCTCGCCCTCCTCCGAATCTGGAGCCGATGCCGGCGGCGAGACCGC CAATATGTCGCCCGGCGCCACGCCGTTGATGATGCGCCTGTCGCCTGACCTTATCCGTTCCAGCCGCCTGCCGGCGCTGC TGGACACCTTCCGGCACGGCAAGTTCGAGCAGTTGGGCATTCCACTCCCGGAAATCCAGCTGCAGAAGGACGCTTCACTG GCTGCCGGCACATTGCAGATTCTGCTGTACCAAGAACCGGTGTTGACAGTTTCGCTGCCCGAGCGGCTATTGCTGGCCGA CATCGCCTCGCCCAAGCTGCCGCAATCCGAGCAGACCGACAAGCTGCCTTTCGGCAATCTGAGCCTGCAGTGGCAGAGCC CGACGCAAAAAGAAGCCTTGTCCGCCATCGGCGTCCAGCTGCATCAGGATGAAGACCGGATCGTTCATTGCCTGTCCATC ATCATCGACCGCTACGCCGCCGAATTCGTCGGTGTGCAGGAAACCCGCTTCCTGATGGATGCGATGGAGTCGAAATACGC CGAGCTGATCAAGGAAGTGCAACGCCAGCTGCCCATCGGCCGCATCGCCGACGTGCTGCAGCGCCTGGTGGCGGAAGGCG TGTCCATCCGCGATCTGCGCAGCGTGTTCGAGGCCTTGATCGAATGGGCGCCGCGGGAAAAAGACCCGGTCATGTTGCTG GAATACGTCCGCATGGGCCTGCGCCGGCACATCGTCACGCGTTACCGCGCCGGACAACCCTGGATCAGCGGCTGGATGAT AGGCGACACCATAGAAGGCATGGTGCGCGAAGCGATACGGCAGACTTCGGCGGGCTCCTACTCGGCGCTGGATCCTGAGC ATAACCAGGCCATCATGAGCTGCATCCGCGAGGCCGTCGGCGACGCGGAGAAACGCAATCAGGTGCTGATCACGGCGATC GACGTGCGGCGATTCCTGCGCAAGGTGGTAGAGAGAGAATTCTTCAACTTGCACGTGTTGTCGTTTCAGGAAATCGGCGA AGAAGCGGAATTGCGCGTGGTCGGCAATATCGACCTGATCGGGGAGTATTAG Protein sequence : MNQIKSFLMMAAGRQDIVLAVMLLVAVFMMIIPLPTGLVDFMIALNLMIAVILLMMSLYIREPLEFSAFPSVLLITTLYR LALTISTTRLILLQADAGEIVYTFGSFAVGGNLGVGLIVFVIITVVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDGD MRAGVIDANEARRLRGLVQKESQLYGAMDGAMKFVKGDAIAGIIIILVNILGGTAIGVMMHGMSASAALSTYAILSIGDG LIGQIPALLISITAGTIVTRVPGEQRLNLASDLTDQIGKQPQALLLAASVLLVFALIPGFPAIYFIILAAMVSAAAWWVK KRKRAARSDSTGSPSSESGADAGGETANMSPGATPLMMRLSPDLIRSSRLPALLDTFRHGKFEQLGIPLPEIQLQKDASL AAGTLQILLYQEPVLTVSLPERLLLADIASPKLPQSEQTDKLPFGNLSLQWQSPTQKEALSAIGVQLHQDEDRIVHCLSI IIDRYAAEFVGVQETRFLMDAMESKYAELIKEVQRQLPIGRIADVLQRLVAEGVSIRDLRSVFEALIEWAPREKDPVMLL EYVRMGLRRHIVTRYRAGQPWISGWMIGDTIEGMVREAIRQTSAGSYSALDPEHNQAIMSCIREAVGDAEKRNQVLITAI DVRRFLRKVVEREFFNLHVLSFQEIGEEAELRVVGNIDLIGEY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 2e-154 | 58 |
| ssaV | NP_456114.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 9e-131 | 52 |
| ssaV | NP_805085.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 9e-131 | 52 |
| ssaV | YP_216422.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 6e-131 | 52 |
| ssaV | NP_460379.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 6e-131 | 52 |
| ssaV | CAA70536.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 4e-131 | 52 |
| escV | AAC31514.1 | L0035 | Virulence | LEE | Protein | 2e-122 | 50 |
| escV | ACU09459.1 | EscV protein | Virulence | LEE | Protein | 2e-122 | 50 |
| escV | NP_290269.1 | hypothetical protein | Virulence | LEE | Protein | 3e-122 | 50 |
| ECs4569 | NP_312596.1 | hypothetical protein | Virulence | LEE | Protein | 3e-122 | 50 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 4e-122 | 49 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 3e-122 | 49 |
| escV | AAK26714.1 | EscV | Virulence | LEE | Protein | 3e-122 | 49 |
| escV | AAL57541.1 | EscV | Virulence | LEE | Protein | 3e-122 | 49 |
| escV | CAI43875.1 | EscV protein | Virulence | LEE | Protein | 2e-122 | 49 |
| escV | CAC81861.1 | EscV protein | Virulence | LEE II | Protein | 6e-122 | 49 |
| escV | YP_003232152.1 | T3SS structure protein EscV | Virulence | LEE | Protein | 4e-122 | 49 |
| escV | YP_003223476.1 | translocator EscV | Virulence | LEE | Protein | 3e-122 | 49 |
| unnamed | AAL06368.1 | EscV | Virulence | LEE | Protein | 3e-121 | 49 |
| escV | YP_003236089.1 | putative translocator EscV | Virulence | LEE | Protein | 2e-121 | 49 |
| escV | AAC38382.1 | EscV | Virulence | LEE | Protein | 4e-122 | 49 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 3e-118 | 46 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 2e-93 | 43 |
| invA | NP_457290.1 | possible secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 5e-103 | 43 |
| invA | NP_806499.1 | virulence-associated secretory protein | Virulence | SPI-1 | Protein | 5e-103 | 43 |
| invA | NP_461817.1 | needle complex export protein | Virulence | SPI-1 | Protein | 5e-103 | 43 |
| invA | YP_217815.1 | invasion protein | Virulence | SPI-1 | Protein | 5e-103 | 43 |
| ysaV | AAS66840.1 | YsaV | Not tested | SSR-1 | Protein | 5e-100 | 42 |
| XC_3013 | YP_244081.1 | HrcV protein | Virulence | Hrp PAI | Protein | 6e-77 | 41 |
| hrcV | NP_636603.1 | protein HrcV | Virulence | Hrp PAI | Protein | 6e-77 | 41 |
| hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 1e-77 | 41 |
| hrcV | AAP34346.1 | HrcV | Virulence | Hrp PAI | Protein | 4e-78 | 41 |
| hrcV | NP_640760.1 | HrcV protein | Virulence | Hrp PAI | Protein | 2e-78 | 41 |
| hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 1e-89 | 41 |
| hrcV | AAG33877.1 | HrcV | Virulence | Hrp PAI | Protein | 2e-90 | 41 |
| hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 3e-86 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| escV | NP_902272.1 | secretion system apparatus protein SsaV | VFG0514 | Protein | 2e-131 | 52 |
| escV | NP_902272.1 | secretion system apparatus protein SsaV | VFG0813 | Protein | 1e-122 | 50 |
| escV | NP_902272.1 | secretion system apparatus protein SsaV | VFG0729 | Protein | 3e-122 | 49 |
| escV | NP_902272.1 | secretion system apparatus protein SsaV | VFG0064 | Protein | 7e-120 | 48 |
| escV | NP_902272.1 | secretion system apparatus protein SsaV | VFG0198 | Protein | 1e-115 | 47 |
| escV | NP_902272.1 | secretion system apparatus protein SsaV | VFG0384 | Protein | 7e-119 | 46 |
| escV | NP_902272.1 | secretion system apparatus protein SsaV | VFG0557 | Protein | 2e-103 | 43 |
| escV | NP_902272.1 | secretion system apparatus protein SsaV | VFG2126 | Protein | 2e-103 | 42 |
| escV | NP_902272.1 | secretion system apparatus protein SsaV | VFG1006 | Protein | 8e-98 | 41 |
