Gene Information

Name : dnaB (CV_2502)
Accession : NP_902172.1
Strain : Chromobacterium violaceum ATCC 12472
Genome accession: NC_005085
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : 3.6.1.-
Position : 2693681 - 2695087 bp
Length : 1407 bp
Strand : -
Note : unwinds double stranded DNA

DNA sequence :
ATGACAGAACAGTACGAGAATTTCGACAGCGAGATGGCGGCCATCCGCACACCGCCGCATTCGGTCGAGGCCGAACAGTC
GGTGCTGGGCGGCCTGCTGCTGGACAACAGCGCCTGGGACAAGATCGCCGACGTGGTGTCCGAGGCCGACTTCTACCGCC
ACGACCATCGCCTGGTGTACAAGCAGATCGCCAAGCTGGTGGAGATGGCGCGCCCGGCCGACGTGGTGACGGTGGCCGAG
GCGCTGGACAAGAACGCCGAACTGGCCGAGATCGGCGGCTTGGCCTATCTGGCCACGCTGGCGCAGAACACGCCGTCGGC
GGCCAACATCCGCCGCTACGCCGAGATCGTCCGCGAGCGCTCGGTGATGCGGCAGCTGGCCCAGGTCGGCACCGAGATCG
CCGAGGCCGCCTACGCGCCGATGGGCCGCGACGCCGCGCAACTGCTGGACGAGGCCGAAGGCCGCGTGTTCCAGATCGCC
GAATCCACCGCCAAGTCCAAGCAAGGCTTTCTGGAAATGCCGGGCCTGCTGAAGGAAGTGGTGGAGCGGATCGACATGCT
TTACAGCCGGGACAACCCGGACGAAGTGACCGGCGTGCCGACCGGCTTCATCGATCTGGACGCCAAGACCTCCGGCCTGC
AGCCGGGCGACCTGATCATCGTCGCCGGCCGTCCGTCGATGGGTAAAACCGCCTTTTCGATGAACATCGCCGAGCACGTG
GCGGTGGAGACCCACCTGCCGGTGGCGGTGTTCTCGATGGAAATGGGCGGCGCGCAGCTGGTGATGCGTATGCTGGGCTC
GGTGGGCCGGCTGGATCAGCATGTGCTGCGCACCGGCAAGCTGGGCGACGACGACTGGCAGAAACTCACCTACGCGATCG
GCAAGCTGTCCGACGCGCCGATGTACATCGACGAAACCCCGGCGCTGACCGCGCTGGAACTGCGCGCCCGAGCCCGACGC
CTGGCCCGCCAGCACGGCGGCAAGCTTGGGCTTATCGTGATCGACTACTTGCAGCTGATGTCGGGCTCCGGCCGCGGCGA
CAACCGCACGGCCGAGCTGGGCGAAATCTCCCGCGGCCTGAAGGGCCTGGCCAAGGAGTTGCAGGTGCCGGTGATCGCCC
TGTCGCAGTTGTCGCGGGCGGTGGAGCAGCGGCCCAACAAGCGGCCGATGATGTCCGACCTTCGCGAATCGGGCGCCATC
GAGCAGGACGCCGACTTGATCATCTTCATGTACCGCGACGAGTACTACAATCCGGATTCGCCCGACAAGGGCCTGGCCGA
GGCCATCATCGGCAAGCACCGTAACGGCCCGACCGGCGCGGTGCGGCTGGCCTTCATCGGCCATTACGCCAAGTTCGACA
ACGCCGCCAGCGTCGGCGCGGCCGGCTGGGCGGACAGCGACAGCTAA

Protein sequence :
MTEQYENFDSEMAAIRTPPHSVEAEQSVLGGLLLDNSAWDKIADVVSEADFYRHDHRLVYKQIAKLVEMARPADVVTVAE
ALDKNAELAEIGGLAYLATLAQNTPSAANIRRYAEIVRERSVMRQLAQVGTEIAEAAYAPMGRDAAQLLDEAEGRVFQIA
ESTAKSKQGFLEMPGLLKEVVERIDMLYSRDNPDEVTGVPTGFIDLDAKTSGLQPGDLIIVAGRPSMGKTAFSMNIAEHV
AVETHLPVAVFSMEMGGAQLVMRMLGSVGRLDQHVLRTGKLGDDDWQKLTYAIGKLSDAPMYIDETPALTALELRARARR
LARQHGGKLGLIVIDYLQLMSGSGRGDNRTAELGEISRGLKGLAKELQVPVIALSQLSRAVEQRPNKRPMMSDLRESGAI
EQDADLIIFMYRDEYYNPDSPDKGLAEAIIGKHRNGPTGAVRLAFIGHYAKFDNAASVGAAGWADSDS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 4e-94 49
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 2e-85 46
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 4e-85 46
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 2e-86 46
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 9e-87 45
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 6e-84 45
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 2e-82 45
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 2e-82 45
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 4e-69 43