Gene Information

Name : prgK (CV_2420)
Accession : NP_902090.1
Strain : Chromobacterium violaceum ATCC 12472
Genome accession: NC_005085
Putative virulence/resistance : Virulence
Product : cell invasion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4669
EC number : -
Position : 2605166 - 2605894 bp
Length : 729 bp
Strand : -
Note : identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1766/TC:3.A.6.1.1

DNA sequence :
ATGATGAAGGCTTGCCTGAAAGCGTTGCTGCTGGCCGCGGCGCTGAGCGGTTGCCAGCAAAAGGACCTGCTGAAAGGATT
GGATCAGCAGCAGGCCAACGAGGTGATCGCGGTGTTGCAGCGTCACAATATCGAAGCCGACAAGGCGGACCGTGGCAAAG
CCGGTTTCAGCATCGCCGTGGCGCCTGCGGATTTCGCCGCGGCGGTGGACTGGCTGCGCGCCTACGACCTGCCTTCCAGG
CCGAGGATGGAAGTGGCGCAGATGTTTCCCGCCGATTCGCTGGTCTCTTCGCCGCGGGCTGAGAAAGCTAGGCTCTATTC
CGCGATAGAGCAGCGGCTGGAGCAGTCGCTGCAAACCATGGACGGCATCCTGTCCGCCCGGGTCCACGTCAGCTACGACC
TGGACAGCGGCGAAGCCGGGCGCGCGTCCCAGCCCATGCATATCTCGGCGCTGGCGGTGTACGACCGCGATGTCGACGCC
GCAGCGATGATCAACAACATCAAGCGTTTCCTGAAGAACAGCTTCGCCGAAGTCGACTACGACAACATCTCGGTGGTGTT
GTCGCGCCGCGAAGAAGCGCAGCAGCAGCCTCCCGGCCCAGCGCCGAAAAGCAATGCCGCCTCCCTGTCCTGGCTGATCG
CCGGGATCGGGTTGGCGCTGCTGGCCGGCATCGCCGCCTGGTGGCGGATGAGGCGCGGCTCCCGAGCCGGAGAGCCTCGC
AATGGCTGA

Protein sequence :
MMKACLKALLLAAALSGCQQKDLLKGLDQQQANEVIAVLQRHNIEADKADRGKAGFSIAVAPADFAAAVDWLRAYDLPSR
PRMEVAQMFPADSLVSSPRAEKARLYSAIEQRLEQSLQTMDGILSARVHVSYDLDSGEAGRASQPMHISALAVYDRDVDA
AAMINNIKRFLKNSFAEVDYDNISVVLSRREEAQQQPPGPAPKSNAASLSWLIAGIGLALLAGIAAWWRMRRGSRAGEPR
NG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prgK YP_217790.1 cell invasion protein Virulence SPI-1 Protein 7e-52 75
prgK NP_461792.1 needle complex inner membrane lipoprotein Virulence SPI-1 Protein 7e-52 75
prgK NP_457265.1 pathogenicity 1 island effector protein Virulence SPI-1 Protein 6e-52 75
prgK NP_806474.1 pathogenicity island 1 effector protein Virulence SPI-1 Protein 6e-52 75
eprK AAZ31284.1 EprK Virulence ETT2 Protein 3e-49 67
ECs3716 NP_311743.1 EprK Not tested LIM Protein 1e-50 67
prgK AAS66872.1 PrgK Virulence SSR-2 Protein 2e-49 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
prgK NP_902090.1 cell invasion protein VFG0533 Protein 3e-52 75
prgK NP_902090.1 cell invasion protein VFG1787 Protein 3e-30 52