Gene Information

Name : ecpD (CV_1295)
Accession : NP_900965.1
Strain : Chromobacterium violaceum ATCC 12472
Genome accession: NC_005085
Putative virulence/resistance : Virulence
Product : chaperone protein ecpD
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 1362393 - 1363142 bp
Length : 750 bp
Strand : +
Note : identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3121

DNA sequence : 
ATGAAACAGGCAGTATGGCGAGGAGCGCTTGCTCTTGCGATTGCGGGATCGGCATGGACCGGCGCGGCTTCGGCCGGCGT
GGTGGTGTCCGGCACCCGCGTCGTGTACAAGGCCGAGGACCGCGAGGTGACCGTCAAGGTCAACAATCCCGGCAAGGAGC
CTTCCTTGGTGCAGGTGTGGGCCGACAAGGGCAATGAGAAGTCCGTGCCCGATACCGCCGATGCGCCTTTCCTGATCATG
CCGCCGATTTTCCGTGTCGATCCTGCCAAGGGCCAGACCCTGAGACTGACCTTCACCGGCGCGGATCTGCCCAAGGAACG
CGAGTCGGTGTTCTGGCTGAACGTGCTGGATGTGCCGCCGCTGCCCAAGGCCGCGAGCGAGCAGCGCAATTTCATGCAAG
TCGCTTTCCGTTCTCGCATCAAGCTGTTCTATCGCCCCGTCGGCCTGCCGGGCACGCCGGACGAAGCGGCCGACAAGCTT
TCCTGGTCTTTGCTGCCGCAGGCCGGCGGCAAGGGCTACATGCTGCGAGCCTCCAATCAGGCCGCGTACCACGTTTCGCT
GAACCGGGCGGTTCTGCTGGTGGGCAAACATGAATATGAAACCGACGGCGGCATGGTTCCGCCGGGCGGCAGCCACGATT
TCGCGCTGAAGGATCTGAAACTCAAGCCGGAAGGCGCTTTGAAGCTCAACTACGAGAGCATCAATGATTACGGTGCCCCG
GTCGCGCACAGCATATCCCTCGCTCACTGA

Protein sequence : 
MKQAVWRGALALAIAGSAWTGAASAGVVVSGTRVVYKAEDREVTVKVNNPGKEPSLVQVWADKGNEKSVPDTADAPFLIM
PPIFRVDPAKGQTLRLTFTGADLPKERESVFWLNVLDVPPLPKAASEQRNFMQVAFRSRIKLFYRPVGLPGTPDEAADKL
SWSLLPQAGGKGYMLRASNQAAYHVSLNRAVLLVGKHEYETDGGMVPPGGSHDFALKDLKLKPEGALKLNYESINDYGAP
VAHSISLAH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD33727.1 putative F17-like fimbrial chaperone Virulence PAI I 536 Protein 9e-33 41
ecpD1 AAO49832.1 pilin chaperone ecpD1 Not tested SPI-3 Protein 1e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ecpD NP_900965.1 chaperone protein ecpD VFG0007 Protein 5e-31 41
ecpD NP_900965.1 chaperone protein ecpD VFG1468 Protein 5e-33 41