Gene Information

Name : PMM0603 (PMM0603)
Accession : NP_892721.1
Strain : Prochlorococcus marinus CCMP1986
Genome accession: NC_005072
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 572795 - 573667 bp
Length : 873 bp
Strand : +
Note : -

DNA sequence : 
ATGGATCTATGCTTTTTATCTACAAACATAACTTCTTTTGTAGCAGATCCTTTATCTCATGAATTTATGAGAAAAGCTCT
ATTGATGAGCTCATTAGTAGCAGCTGTTTGTGGATTTTTATCTAGTTATTTAACACTTAAAGGTTGGGCTTTAATGGGAG
ATGCGGTATCTCACTCTGTAATGCCTGGTGTTGTTGTGGCTTATGCTTTGGGACTTCCTTTCTCGCTTGGGGCTTTCATT
TTTGGAGTGGGTTCGGTAGCTTTAATAGGCTTTGTTAAACAAAAATCCAGAGTTAAAGAAGATACCGTAATTGGCTTGGT
TTTCACAGGTTTTTTTGCTCTTGGAATAGTTTTAGTTTCAAAGATTAAAAGTAATATTGATCTTCACTCAATTCTTTTTG
GTAGCCCTCTAGGGATTTCTCTCTCAGATGTAAAACAGACGGTATTTATTTCTCTATTAGTGGTAATACTATTGTCAGTT
TTTAGGAAAGACTTAATACTTTATTGTTTTGATCCAAGACACGCAAAAACAGTAGGAATTAATGTCTTATTTCTTCATTA
TTTATTACTTACATGTTTGTCTTTAGCGGCTGTAGTTGGATTACAATCTGTTGGAATAGTTCTGGTTGTTGCAATGCTGA
TTACTCCTGGGGCAACGGCATATTTATTAACAGATAAGTTTGATAATATGACCATCATTTCAGTAATTAGTGCCATCATT
TCAAGTGTATTTGGTATTTATTTTAGCTTTTGGTTTGATCTTGAAACTGGCGGCTCAATTGTATTAGTTCAAACGTTTAT
ATTTTTATTTGCTTTTTTATTTGCTCCAAGATACGGGATATTTAAATTTAAAAAATTATTTTCTAGTTATTAG

Protein sequence : 
MDLCFLSTNITSFVADPLSHEFMRKALLMSSLVAAVCGFLSSYLTLKGWALMGDAVSHSVMPGVVVAYALGLPFSLGAFI
FGVGSVALIGFVKQKSRVKEDTVIGLVFTGFFALGIVLVSKIKSNIDLHSILFGSPLGISLSDVKQTVFISLLVVILLSV
FRKDLILYCFDPRHAKTVGINVLFLHYLLLTCLSLAAVVGLQSVGIVLVVAMLITPGATAYLLTDKFDNMTIISVISAII
SSVFGIYFSFWFDLETGGSIVLVQTFIFLFAFLFAPRYGIFKFKKLFSSY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-46 45
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-46 45
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 6e-46 44
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 6e-46 44
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-46 44
sitC NP_461784.1 permease Virulence SPI-1 Protein 7e-48 42
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 5e-48 42
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 5e-48 42
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 6e-48 42
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-48 42
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 9e-42 41
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 7e-42 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PMM0603 NP_892721.1 ABC transporter BAC0441 Protein 3e-48 47
PMM0603 NP_892721.1 ABC transporter BAC0352 Protein 1e-46 45
PMM0603 NP_892721.1 ABC transporter BAC0442 Protein 7e-54 45
PMM0603 NP_892721.1 ABC transporter BAC0351 Protein 3e-48 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PMM0603 NP_892721.1 ABC transporter VFG0528 Protein 1e-46 45
PMM0603 NP_892721.1 ABC transporter VFG0527 Protein 3e-48 42