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Name : clpC (PMM1088) Accession : NP_893205.1 Strain : Prochlorococcus marinus CCMP1986 Genome accession: NC_005072 Putative virulence/resistance : Virulence Product : ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1032024 - 1034552 bp Length : 2529 bp Strand : - Note : regulatory subunit of ATP-dependent Clp protease DNA sequence : ATGTTTGAAAGATTTACAGAAAAAGCAATCAAAGTCATTATGCTTGCTCAAGAAGAGGCTAGGAGGCTTGGGCATAATTT TGTTGGAACAGAACAAATACTTTTAGGTTTAATTGGAGAAGGAACAGGTGTAGCTGCAAAGGTGCTCAAATCACTAGGTG TAAATTTAAAAGATTCAAGAATAGAAGTTGAGAAAATAATAGGAAGAGGTTCAGGATTTGTAGCAGTTGAAATACCTTTT ACACCGAGAGCTAAAAGAGTTTTAGAATTATCTCTTGAAGAAGCACGCCAATTGGGTCACAATTATATAGGTACGGAACA TTTACTTTTAGGTTTAATAAGAGAAGGAGAAGGGGTTGCAGCAAGAGTTTTAGAAAATCTAGGAATTGACTTAACGAAAG TCAGAACTCAAGTTATAAGAATGCTAGGAGAGACTGCTGAGGTTGGTTCAGGTGGGTCTTCAAATAAGGGTAATTTAAAG ACAGCTACTCTTGACGAGTTTGGTACAAATTTAACAAAACTAGCAAGCGAATCAAAACTCGATCCAGTTGTTGGACGCTA TGCAGAAATTGATAGAGTTATTCAAATTTTAGGTAGAAGAACTAAAAATAATCCTGTTCTTATAGGTGAACCTGGAGTAG GAAAAACTGCTATTGCTGAAGGTTTAGCACAAAGAATACAACTTGGAGAAATTCCAGATATACTTGAGGATAAAAGAGTT CTAACTCTTGATATTGGTCTCCTTGTCGCAGGAACAAAATATAGAGGTGAATTTGAAGAAAGACTAAAAAAAATAATGGA AGAAATTAAATCTGCAGGTAACGTTATATTGGTTATCGATGAAGTTCATACTTTAATAGGTGCAGGAGCTGCTGAAGGAG CAATTGATGCTGCCAATATATTAAAACCAGCATTAGCTAGAGGTGAGCTCCAATGTATAGGTGCTACAACTCTTGATGAA TATAGAAAGCATATTGAAAGAGATGCTGCTCTCGAAAGAAGATTCCAACCTGTAATGGTTGGAGAGCCATCTATTGCTGA TACTATTGAAATTTTAAAAGGTTTAAGAGAACGTTACGAGCAACATCATCGTTTAAAAATTACAGATAATGCATTAGAAG CAGCAGCTCATTTAGGTGATCGCTACATTTCTGATAGATTTTTACCAGACAAAGCTATAGATCTTATAGATGAGGCTGGT AGTAGAGTAAGGTTGATTAATTCTAAACTTCCTCCCGAAGCGAAACAAATTGATAAAGAATTAAGACAAGTCCAGAAACA AAAAGAAGAATCAGTAAGAGATCAGAACTTTGACCAGGCAGGTGTGTTAAGAGAAAAAGAGATTGAATTATCTGCAAAAA TAAAAGAGTTATTGGAAAATAAAAAAGAAAGTTCAGAAAAAAATGAAATAAGTAATGCTAATGAAACTACGGAAAATAAC TCAACTATTATTCATGATCCTCTTGTAAGTGAAGAAGATGTAGCCCATATAGTTGCTTCTTGGACCGGAGTTCCTGTTCA GAAATTAACAGAAACCGAATCAGTCAAACTTCTTAATATGGAAGAGACTTTGCATCAAAGGTTAATAGGTCAAGATGAGG CTGTTAAAGCAGTATCAAAAGCTATTAGAAGAGCTAGAGTCGGTTTACAAAATCCTAATAGGCCAATTGCAAGTTTTATC TTTTCAGGTCCTACTGGGGTTGGAAAAACTGAATTAACCAAATCCTTGGCTTCGTATTTCTTTGGTAGTGAAGAAGCCAT GATCAGATTAGATATGTCTGAATTTATGGAAAGACATACTGTTAGCAAATTAATTGGTTCACCTCCAGGGTATGTTGGAT TTAATGAGGGAGGCCAACTTACAGAGGCAGTAAGAAGAAGACCATACACTGTCGTACTCTTTGATGAAGTTGAGAAAGCT CATCCAGACGTATTTAATTTACTATTACAATTACTGGAAGATGGAAGATTGACAGACTCAAAAGGTAGAACGGTCGATTT TAAAAATACACTTTTAATAATGACTTCTAATATTGGTTCTAAAGTAATCGAAAAAGGTGGTGGAGGTTTAGGCTTTGAAT TTTCAGGAGATTCAGTTGAAGATAGCCAATATAATAGGATAAAATCTTTGGTAAATGAGGAATTAAAACAATACTTTAGA CCAGAATTTTTAAATAGGCTCGATGAAATAATTGTATTTAGACAATTATCTAAAAATGAAGTTAAAGATATTGCAGAAAT AATGTTAAAAGAAGTTTTTTCTAGATTAAACGAGAAGGGTATAAAACTAGATGTTACTGATGCTTTTAAAGAAAGGCTTG TCGAGGAAGGATATAATCCAGCTTACGGAGCAAGGCCTTTAAGAAGAGCAGTCATGCGCTTATTAGAAGATAGTTTAGCT GAAGAGGTGTTATCAGGAAGAATTAAAGATGGAGACAAAGCTATAGTTGATATTGATGAGAACAAGAAAGTTATAGTAAA TATTTCTACAGAAGAATCTTCTCAAGAATTGGCAGGGGCTAATTTCTAG Protein sequence : MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSLGVNLKDSRIEVEKIIGRGSGFVAVEIPF TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGIDLTKVRTQVIRMLGETAEVGSGGSSNKGNLK TATLDEFGTNLTKLASESKLDPVVGRYAEIDRVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIQLGEIPDILEDKRV LTLDIGLLVAGTKYRGEFEERLKKIMEEIKSAGNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDE YRKHIERDAALERRFQPVMVGEPSIADTIEILKGLRERYEQHHRLKITDNALEAAAHLGDRYISDRFLPDKAIDLIDEAG SRVRLINSKLPPEAKQIDKELRQVQKQKEESVRDQNFDQAGVLREKEIELSAKIKELLENKKESSEKNEISNANETTENN STIIHDPLVSEEDVAHIVASWTGVPVQKLTETESVKLLNMEETLHQRLIGQDEAVKAVSKAIRRARVGLQNPNRPIASFI FSGPTGVGKTELTKSLASYFFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGFNEGGQLTEAVRRRPYTVVLFDEVEKA HPDVFNLLLQLLEDGRLTDSKGRTVDFKNTLLIMTSNIGSKVIEKGGGGLGFEFSGDSVEDSQYNRIKSLVNEELKQYFR PEFLNRLDEIIVFRQLSKNEVKDIAEIMLKEVFSRLNEKGIKLDVTDAFKERLVEEGYNPAYGARPLRRAVMRLLEDSLA EEVLSGRIKDGDKAIVDIDENKKVIVNISTEESSQELAGANF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | NP_893205.1 | ClpC | VFG0079 | Protein | 0.0 | 58 |
| clpC | NP_893205.1 | ClpC | VFG0080 | Protein | 6e-146 | 48 |
