Gene Information

Name : PMT0416 (PMT0416)
Accession : NP_894249.1
Strain : Prochlorococcus marinus MIT 9313
Genome accession: NC_005071
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 465391 - 466260 bp
Length : 870 bp
Strand : -
Note : -

DNA sequence : 
ATGACAGAGCTTCTTGCAACAGCGACAACGCTGTCTTGGTTATTGGAACCCCTTAGTCATGAGTTCATGGTGCGTGCCTT
GGTGGTGAGCGCTCTTGTTGGAGGGGTATGTGGACTGCTCTCCTGCTACATGACCCTCAAGGGCTGGGCGTTAATGGGCG
ATGCGGTCTCCCATGCCGTGATGCCCGGAGTGGTTGTGGCCTATGCCCTGGGGTTGCCGTTCTCGATAGGGGCCTTTGTC
TTTGGCGTGGGGTCGGTGGCTTTGATTGGCTTTGTAAAACAGAAGTCACGGGTCAAGGAAGACACTGTGATTGGCCTTGT
CTTTACAGGTTTTTTTGCGCTCGGATTGGTACTGGTATCCAAAACCAGAAGCAACATCGACCTCACCCATATTCTTTTTG
GCAATGTGCTCGGAATCTCAATGGCTGATATCCAGCAAACACTTTTGATTTCTGGAATTGTGGTGGCAATTCTGTTGGTT
CTTCGCAGGGATTTTATGTTGTTCTGCTTTGATCCAACCCATGCACGATCGATCGGCATAAATACAGGACTACTACATTA
TTTGCTGTTATCAGTGTTATCACTTGCTGCTGTTGCTGGTCTACAGACCGTAGGCATCATTCTGGTGGTTGCGATGTTAA
TCACTCCTGGCGCTACGGCCTATCTACTCACAGACCGCTTTGATCGGATGACTTTGCTCGCAATCCTCAGCAGTGCCCTT
TCAAGTGTTCTAGGGGTCTACATCAGCTATTGGACCGATAGTTCCACTGCAGGCTGCATTGTGCTGGTGCAGACCGTTCT
TTTCCTGCTGACTTTCTTATTCTCCCCTCGATACGGCATTTTGAAAGTTCAGCGTTCACTTGCTCCATAG

Protein sequence : 
MTELLATATTLSWLLEPLSHEFMVRALVVSALVGGVCGLLSCYMTLKGWALMGDAVSHAVMPGVVVAYALGLPFSIGAFV
FGVGSVALIGFVKQKSRVKEDTVIGLVFTGFFALGLVLVSKTRSNIDLTHILFGNVLGISMADIQQTLLISGIVVAILLV
LRRDFMLFCFDPTHARSIGINTGLLHYLLLSVLSLAAVAGLQTVGIILVVAMLITPGATAYLLTDRFDRMTLLAILSSAL
SSVLGVYISYWTDSSTAGCIVLVQTVLFLLTFLFSPRYGILKVQRSLAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-47 49
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-47 49
sitC NP_461784.1 permease Virulence SPI-1 Protein 2e-47 49
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-47 49
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-47 49
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-41 49
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 4e-41 49
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 6e-41 49
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 6e-41 49
sitD NP_461785.1 permease Virulence SPI-1 Protein 6e-41 49
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 2e-34 43
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 2e-34 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PMT0416 NP_894249.1 ABC transporter BAC0442 Protein 2e-53 53
PMT0416 NP_894249.1 ABC transporter BAC0351 Protein 9e-48 49
PMT0416 NP_894249.1 ABC transporter BAC0352 Protein 3e-41 49
PMT0416 NP_894249.1 ABC transporter BAC0441 Protein 4e-42 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PMT0416 NP_894249.1 ABC transporter VFG0527 Protein 8e-48 49
PMT0416 NP_894249.1 ABC transporter VFG0528 Protein 2e-41 49