|
Name : ureC (PMT2236) Accession : NP_896060.1 Strain : Prochlorococcus marinus MIT 9313 Genome accession: NC_005071 Putative virulence/resistance : Virulence Product : urease subunit alpha Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0804 EC number : 3.5.1.5 Position : 2361109 - 2362833 bp Length : 1725 bp Strand : + Note : ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alp DNA sequence : ATGGCCTACCGGATCGATCGCCAGGCCTACGCCGAAACCTACGGCCCCACCACAGGTGACCGCATACGCCTAGCAGACAC CGAGTTGATCCTGGAGGTGGAACGCGATTTCACCACCTACGGCGAAGAAGTCAAATTCGGTGGAGGGAAAGTGATCCGCG ACGGCATGGGGCAATCCCAGCAATCCCGCGCCAATGGTGCTGTTGACACCGTGATCACCAATGCCCTGATCCTCGACTGG TGGGGGATCGTCAAAGCAGATATCGGCCTAAGAGACGGACGGATCGTTGCCATCGGCAAGGCTGGCAATCCCGACATCAC TGACGGGATTGACATTGTGATCGGCCCAGGCACTGAAGCCATTGCTGGAGAGGGTCACATCGTGACCGCCGGCGCCATCG ATAGCCACATCCATTTCATTTGCCCACAGCAAATCGAGACTGCCCTGGCTAGCGGCGTTACCACCATGCTCGGTGGTGGT ACAGGTCCGGCAACAGGCACCAATGCCACTACCTGTACACCTGGCGCCTTTCACATCAGCCGCATGCTGCAAGCAGCCGA AGGCTTGCCGATGAATCTTGGCTTCTTTGGTAAAGGCAATGCCAGTACAGCTGAAGCTCTCGAGGAGCAAGTACTAGCCG GTGCCTGCGGCCTCAAACTCCACGAAGACTGGGGTACCACTCCAGCAGCTATTGACTGCTGTCTTTCGGTAGCCGATCGC TTTGATGTCCAGGTCTGCATCCACACAGACACGCTCAATGAAGCAGGTTTTGTAGAAGACACAATCCGAGCCATCGGCGG ACGCACCATCCACACCTTCCATACCGAAGGGGCCGGTGGAGGCCATGCACCAGACATCATCCGTATCTGTGGTGAAAGCA ACGTGCTGCCCAGCTCCACAAATCCAACCCGGCCTTACACCCGCAACACCCTGGAAGAGCACCTCGACATGCTCATGGTT TGCCACCACCTAGATCCAGCGATTCCTGAAGATGTGGCCTTTGCCGAATCGCGCATCCGTCGCGAAACGATCGCTGCGGA AGATATTCTCCACGACCTCGGTGCCTTCAGCATCATTGCCAGTGATTCCCAAGCGATGGGACGAGTCGGAGAGGTGATTA CCAGAACATTCCAGACCGCTCACAAGATGAAAGTTCAGAGAGGCCCTCTGCCAGAAGATGCTGCCAATCCACGTGGCAGT CGTAACGACAACAACCGCATAAAGCGCTACATCGCCAAAGTAACGATCAACCCCGCCATTGCCCACGGCATTGACAACCA TGTTGGCTCAGTAGAGGTAGGCAAACTGGCAGACCTGGTGCTCTGGAAGCCAGGCTTCTTCGGCGTGCGGCCAGAACTTG TCATCAAGGGCGGGTCAATCATCTGGGCGCAAATGGGCGATGCTAATGCCTCGATTCCAACACCTGGACCAGTCCATGGC AGACCAATGTTTGCAGCATTCGGCAAAGCCCTTGCCCCCAGCTGCCTCACCTTCCTGAGCCAAGCGGCCATCGAAACAGA TCTTCCCAACAAGCTGGGGCTGCAACGTGCCTGCATTCCCGTTCTGAACACCCGCACGATCGGCAAAGCAGAAATGCACA ACAACAATTCACTACCAAAAGTAGAGGTAGATCCACAAACTTACGAGGTGTTCGCCGACGGCGATTTACTCACATGCGAC CCCGCAGAAGAACTGCCAATGGCCCAGCGATATCTCCTACTTTAA Protein sequence : MAYRIDRQAYAETYGPTTGDRIRLADTELILEVERDFTTYGEEVKFGGGKVIRDGMGQSQQSRANGAVDTVITNALILDW WGIVKADIGLRDGRIVAIGKAGNPDITDGIDIVIGPGTEAIAGEGHIVTAGAIDSHIHFICPQQIETALASGVTTMLGGG TGPATGTNATTCTPGAFHISRMLQAAEGLPMNLGFFGKGNASTAEALEEQVLAGACGLKLHEDWGTTPAAIDCCLSVADR FDVQVCIHTDTLNEAGFVEDTIRAIGGRTIHTFHTEGAGGGHAPDIIRICGESNVLPSSTNPTRPYTRNTLEEHLDMLMV CHHLDPAIPEDVAFAESRIRRETIAAEDILHDLGAFSIIASDSQAMGRVGEVITRTFQTAHKMKVQRGPLPEDAANPRGS RNDNNRIKRYIAKVTINPAIAHGIDNHVGSVEVGKLADLVLWKPGFFGVRPELVIKGGSIIWAQMGDANASIPTPGPVHG RPMFAAFGKALAPSCLTFLSQAAIETDLPNKLGLQRACIPVLNTRTIGKAEMHNNNSLPKVEVDPQTYEVFADGDLLTCD PAEELPMAQRYLLL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ureC | NP_286680.1 | urease subunit alpha | Virulence | TAI | Protein | 9e-171 | 68 |
| ureC | NP_287088.1 | urease subunit alpha | Not tested | TAI | Protein | 9e-171 | 68 |
| ureC | YP_005686358.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 3e-159 | 61 |
| ureC | YP_005684266.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 6e-158 | 61 |
| ureC | YP_005682174.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 3e-159 | 61 |
| ureC | YP_003784325.1 | urease subunit alpha | Not tested | PiCp 7 | Protein | 3e-159 | 61 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ureC | NP_896060.1 | urease subunit alpha | VFG0270 | Protein | 4e-152 | 63 |
