|
Name : lysS (PMT0147) Accession : NP_893980.1 Strain : Prochlorococcus marinus MIT 9313 Genome accession: NC_005071 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 166179 - 167705 bp Length : 1527 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGGCGAGGTCAGTCCTGAGTGCCTTGTCTGAGCTGCGTGAGACTCGCCTGGAAAAGGCACAAGCCCTCAAAGAGCTGGG GAATGGGCCCTATGCCCTGCGCTTTGAGTCAAGCCATAGCACCGCTAACTTGCAGGCGGATCATGCTGATTTGGCCAAGG GTGAGGAGAGGCTTCTCACTGTGTCTGTGGCTGGTCGGGTGATGACCCGTCGTGTCATGGGCAAGTTGGCTTTCTATACC TTGGCGGATGAGACCGGCACGATTCAGTTGTATTTGGAGAAGGCCACCATTGATGCGGCTGCATCAAATGAGCTGGCTTC AGGAACTTTTGTTCAGCTCACCACCCTTGTTGACGCGGGCGACTGGATTGGGGTCACAGGCGTGCTTCGTCGCACTGACC GTGGTGAGCTTTCGGTGAAGGTTCAGCAGTGGCAGATCTTGAGCAAATCATTGCAACCCTTGCCAGATAAGTGGCACGGT TTAGCTGATGTGGAGAAGCGCTATCGGCAACGCTATCTGGATTTGATCGTGTCGCCTCAGTCGCGTGAGACTTTTCGCCG CCGGGCATTGATGGTGAGTGCAATCCGTCGATGGCTCGATGATCGTGCCTTCTTGGAAATCGAAACACCGGTGCTTCAGG CTGAGGCCGGTGGCGCCGAAGCTAGGCCATTCATTACTCACCACAACACACTCGATCTTCCTCTTTATCTGCGTATTGCC ACAGAGCTGCATCTCAAGAGGCTTGTGGTTGGTGGATTTGAGCGGGTCTATGAGCTTGGGCGCATCTTTCGTAACGAGGG GATGAGTACCCGCCACAACCCTGAATTCACTTCTGTAGAGGTCTATCAGGCCTATGCGGATTACATTGACATGATGGTCC TTACTGAGCAGCTGATTTCCTCAGTTTGTACTCAGATCTGTGGGTCTACGAGGATCACTTATCAAGGCATAGAAATCGAC CTAACGCCCCCTTGGCGGAGAGCCAGCATGCACGAACTGGTGCAAGAGGCGACGGGGCTTGATTTCATGGGTTTTAAAGA CCTTGCGGTAGCGGCTTCGGCTATGGCGCGGGTAGGTCTAGAGGTGCCGTCTAAGGCCGATAGTGTGGGCCGCTTGCTTA ATGAGGCCTTTGAACAAGCAGTGGAGGTAAGTTTGATCCAGCCAACATTTGTGCTCGACTATCCGATTGAGATCTCGCCT CTTGCCCGACAACATCGCAGCAAACCAGGATTGGTCGAGCGCTTTGAATTGTTCATTGTGGGTCGGGAAACAGCCAATGC TTTTAGTGAGTTAATCGATCCCCTTGATCAACGTCAGCGGCTTGAGGCTCAGCAAGCACGCCGTCAGGCTGGGGACCTTG AGGCTCATGGGGTTGATGAGGATTTCCTTCAGGCTCTTGAGGTGGGCATGCCCCCTACCGGTGGCTTGGGTATTGGCATC GATCGCTTAGTGATGTTGTTTACCGATAGCCCTTCAATACGTGATGTGATTGCTTTCCCTCTGCTTCGACCGGAGCTCAA AACTTAA Protein sequence : MARSVLSALSELRETRLEKAQALKELGNGPYALRFESSHSTANLQADHADLAKGEERLLTVSVAGRVMTRRVMGKLAFYT LADETGTIQLYLEKATIDAAASNELASGTFVQLTTLVDAGDWIGVTGVLRRTDRGELSVKVQQWQILSKSLQPLPDKWHG LADVEKRYRQRYLDLIVSPQSRETFRRRALMVSAIRRWLDDRAFLEIETPVLQAEAGGAEARPFITHHNTLDLPLYLRIA TELHLKRLVVGGFERVYELGRIFRNEGMSTRHNPEFTSVEVYQAYADYIDMMVLTEQLISSVCTQICGSTRITYQGIEID LTPPWRRASMHELVQEATGLDFMGFKDLAVAASAMARVGLEVPSKADSVGRLLNEAFEQAVEVSLIQPTFVLDYPIEISP LARQHRSKPGLVERFELFIVGRETANAFSELIDPLDQRQRLEAQQARRQAGDLEAHGVDEDFLQALEVGMPPTGGLGIGI DRLVMLFTDSPSIRDVIAFPLLRPELKT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 3e-98 | 47 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 1e-79 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | NP_893980.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-98 | 47 |
