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Name : clpC (SYNW0938) Accession : NP_897031.1 Strain : Synechococcus sp. WH 8102 Genome accession: NC_005070 Putative virulence/resistance : Virulence Product : endopeptidase Clp ATP-binding chain C Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 898196 - 900736 bp Length : 2541 bp Strand : + Note : ATP-dependent Clp protease regulatory subunit DNA sequence : ATGTTCGAACGTTTTACTGAGAAGGCCATCAAGGTGATCATGCTGGCCCAGGAAGAGGCTCGGCGACTTGGTCACAACTT CGTTGGCACCGAACAGATTCTTCTGGGTTTGATCGGAGAGGGCACGGGTGTCGCCGCGAAGGTTCTGAAGTCGATGGGTG TCAACCTCAAGGACGCCCGGGTTGAAGTTGAGAAGATCATCGGCCGAGGTTCTGGCTTTGTGGCCGTTGAGATCCCCTTC ACGCCAAGGGCTAAGCGGGTGCTCGAACTCTCCCTGGAAGAAGCCAGACAGTTGGGGCACAACTACATCGGTACCGAGCA TCTGCTGCTCGGTTTGATACGGGAAGGCGAAGGCGTTGCGGCCCGTGTGCTCGAGAATCTGGGTGTGGATCTGGCCAAGG TCAGAACCCAGGTCATTCGCATGCTGGGTGAAACCGCCGAAGTGTCCGGCGGTGGCGGTGGTGGTGGAGCAAAAGGTTCC ACCAAGACACCCACCCTGGATGAATTCGGCAGCAACCTCACCCAGATGGCCAACGAGGCCAAGTTGGACCCCGTGGTGGG TCGCCACAACGAGATTGAACGGGTCATCCAGATCCTGGGTCGCCGAACCAAGAACAATCCGGTGTTGATCGGCGAGCCGG GTGTGGGCAAGACGGCTATCGCCGAAGGTCTTGCTCAGCGCATCCAGCAGGGTGAAATTCCGGACATCCTGGAAGACAAG CGCGTCCTCACCCTTGATATTGGACTGCTCGTCGCAGGGACCAAATACCGCGGTGAGTTTGAGGAGCGCCTCAAGAAGAT CATGGAGGAGATCAAGGCGGCCGGGAACGTGATCCTGGTGATCGACGAGGTTCACACCCTGATCGGTGCTGGTGCTGCTG AGGGCGCCATCGATGCGGCCAACATTCTCAAGCCGGCTCTCGCCAGGGGCGAGCTGCAGTGCATCGGTGCCACAACCCTG GATGAGTATCGCAAGCACATCGAGCGTGATGCTGCGCTGGAACGGCGTTTCCAGCCCGTCAACGTCGGTGAGCCCTCCAT CGATGACACCATCGAAATCCTGCGGGGCCTGCGCGAGCGCTACGAGCAGCACCACCGCCTCAAGATCACCGACGATGCTC TTGTGGCTGCGGCAACCCTCGGTGATCGCTACATCTCGGACCGCTTCCTCCCCGACAAGGCGATCGACCTGATTGATGAG GCCGGTTCACGGGTTCGGCTGCTCAATTCCAAGCTCCCACCCGAGGCCAAGGAGGTGGACAAGGAGTTGCGCGGCGTCCA GAAACAGAAAGAGGACGCCGTACGCGACCAGGACTTCACTAAAGCCGGTGAACTTCGTGAAAAGGAGGTTGAGCTGCGCG ATCAGATTCGCTCTCTGCTGCAAGCCAACCGCACCGATGCCACCGCCGTTGCTGAAGCGTCCGCAGACCAGAGCGATGCG CCTGCGGCAGAGTCCGCCGAGTCCTCGCCCATGGTGAATGAGGAGGACATTGCCCAGATCGTTGCCTCCTGGACCGGTGT GCCGGTGCAGAAGCTCACCGAGAGCGAATCGGTGAAGCTGCTGAACATGGAGGAGACGCTGCACCAGCGTCTGATCGGTC AGGACGAAGCGGTCAAGGCGGTGTCCAAAGCCATCCGTCGGGCCCGTGTCGGTCTGAAGAACCCGAATCGTCCCATCGCC AGCTTCATCTTCTCCGGCCCCACCGGTGTCGGTAAGACCGAGCTCACCAAGGCTCTGGCCACCTACTTCTTCGGCAGTGA GGAGGCGATGATCCGCCTCGACATGTCGGAGTTCATGGAGCGCCACACGGTCAGCAAGCTGATCGGCTCGCCTCCGGGCT ATGTGGGCTTCAACGAAGGCGGTCAGCTCACCGAAGCGGTGCGACGCCGCCCCTACACCGTGGTGCTGTTCGATGAAATC GAGAAAGCGCACCCTGATGTGTTCAACCTGCTACTGCAGCTACTTGAAGATGGCCGTCTGACCGATTCCAAGGGCCGCAC GGTCGACTTCAAGAACACCCTGGTGATCATGACCTCGAACATCGGTTCGAAGGTTATTGAGAAGGGTGGCGGTGGCCTTG GTTTCGAGTTCTCTGGTGAGAGTGCTGAGGAGTCTCAATACACCCGCATCCGCTCGCTCGTGAATGAGGAGCTGAAGCAG TACTTCCGCCCTGAATTCCTCAACCGGCTCGACGAGATCATCGTGTTCCGTCAGCTCAGCCGCGATGAGGTGAAGGAGAT CGCCGAAATCATGCTGAAGGAAGTCTTCGGCCGGATGGGCGAGAAAGGCATCACCCTCACCGTGTCCGATGCGTTCAAGG AGCGGTTGGTGGAAGAGGGATACAACCCGGCCTATGGAGCTCGCCCCCTGCGTCGCGCTGTGATGCGGTTGCTGGAGGAT TCCCTGGCAGAGGAAGTGCTCTCCGGCCGGATCAAGGATGGTGACCATGCCGAGGTGGATGTCGACGACGACAAGAAAGT TGTCGTCCGCCACAAAGGTCTGGCTGAGAGCTCTCCTCAATTGGCAGGTGCGGCTGTCTGA Protein sequence : MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARVEVEKIIGRGSGFVAVEIPF TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLAKVRTQVIRMLGETAEVSGGGGGGGAKGS TKTPTLDEFGSNLTQMANEAKLDPVVGRHNEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIQQGEIPDILEDK RVLTLDIGLLVAGTKYRGEFEERLKKIMEEIKAAGNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTL DEYRKHIERDAALERRFQPVNVGEPSIDDTIEILRGLRERYEQHHRLKITDDALVAAATLGDRYISDRFLPDKAIDLIDE AGSRVRLLNSKLPPEAKEVDKELRGVQKQKEDAVRDQDFTKAGELREKEVELRDQIRSLLQANRTDATAVAEASADQSDA PAAESAESSPMVNEEDIAQIVASWTGVPVQKLTESESVKLLNMEETLHQRLIGQDEAVKAVSKAIRRARVGLKNPNRPIA SFIFSGPTGVGKTELTKALATYFFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGFNEGGQLTEAVRRRPYTVVLFDEI EKAHPDVFNLLLQLLEDGRLTDSKGRTVDFKNTLVIMTSNIGSKVIEKGGGGLGFEFSGESAEESQYTRIRSLVNEELKQ YFRPEFLNRLDEIIVFRQLSRDEVKEIAEIMLKEVFGRMGEKGITLTVSDAFKERLVEEGYNPAYGARPLRRAVMRLLED SLAEEVLSGRIKDGDHAEVDVDDDKKVVVRHKGLAESSPQLAGAAV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | NP_897031.1 | endopeptidase Clp ATP-binding chain C | VFG0079 | Protein | 0.0 | 58 |
| clpC | NP_897031.1 | endopeptidase Clp ATP-binding chain C | VFG0080 | Protein | 1e-146 | 52 |
