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Name : clpB1 (SYNW1503) Accession : NP_897596.1 Strain : Synechococcus sp. WH 8102 Genome accession: NC_005070 Putative virulence/resistance : Virulence Product : endopeptidase Clp ATP-binding chain B Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1453282 - 1455909 bp Length : 2628 bp Strand : + Note : - DNA sequence : ATGCCCATACGGTTTGTTCAGGACAACCGCAACAGTCATATGCAACCCACAGCCGAACAGTTCACCGAACAGGCCTGGGC CGCCATCGTCGCGGCCCAGCAACTCGCCCAGGCCTCCAGGCACCAGCAGCTGGAAACCGAACATCTGCTGCTGGCGCTGC TTCGACAGAACGGACTGGCCGGGCGAATCCTCAGCAAAACCGGCGTTGACGTCACCACCTTCGAGGCCAGTGTTGAAGGC CATCTGCAACGGCTTCCCAGCCTTGGCTCGGCACCCGACTCGGTGTTTCTTGGCCGATCCCTCAACAAGGCCCTCGACCG AGCCGAGCAGCGGCGGGATGGATTCGGCGACAGCTTCATCGCCATCGAGCATCTGCTTCTGGCCCTGGCGGAGGATGATC GCTGCGGCCGGCAACTGCTCAGCCAGGCCGGGGTGACCACCAACACACTCAAGGAGGCGATCACGGCGGTGCGCGGCAAC CAAACGGTGACAGACCAGAACCCTGAGGCCACCTACGAATCCCTGGCGAAATACGGCCGCGATCTCACAGCAGCGGCCCG CGATGGTCAGCTGGATCCGGTGATCGGACGGGATGAAGAGATCCGCCGCACCATTCAGATACTCAGCCGCCGCACCAAGA ACAACCCCGTGCTGATCGGTGAACCCGGGGTCGGCAAAACAGCAATCGTCGAGGGCTTGGCACAGCGGATCGTCAATGGT GATGTGCCCCAGGCCCTGCAGAACCGACAGCTCATTACCCTCGACATGGGTGCCCTGATCGCCGGGGCGAAATACCGGGG TGAGTTCGAAGAACGGCTCAAAGCGGTGCTGAAGGAGGTCACCACCTCCGATGGACAGATTGTGCTGTTCATCGATGAGA TCCACACGGTGGTGGGCGCTGGCGCCAGCGGTGGTGCCATGGACGCCAGCAATCTGCTGAAACCGATGCTGGCCCGGGGT GAACTGCGCTGCATCGGGGCCACCACCCTTGATGAGCACCGTCAGCACATCGAAAAGGATCCCGCCCTGGAGCGACGCTT TCAGCAGGTGCTGGTGGATCAGCCCACAGTGCCGGACACGATTTCAATCCTGCGGGGCCTGAAGGAGCGCTACGAGGTAC ACCACGGCGTACGCATTGCCGACAGCGCTTTGGTGGCCGCCGCCATGCTCAGCAGCAGATACATCACCGATCGCTTCCTG CCGGACAAGGCCATCGACCTGGTGGATGAATCCGCCGCCCGGCTGAAAATGGAGATCACCTCCAAACCGGAGCAGATCGA CGAGATCGATCGCAAAATTCTGCAGCTGGAGATGGAAAAACTCTCCCTCGGCCGTGAGTCCGACAGTGCCAGCCAGGAGC GGTTGCAACGGATTGAACGGGAATTGGCGGAACTGGGTGAACAACAGAGCAGCCTCAATGCCCAGTGGCAGAGCGAAAAA GGTGCCATTGATCAGCTCTCGGCTCTCAAGGAGGAGATCGAACGGGTGCAGCTGCAGGTGGAGCAGGCCAAACGCAATTA CGACCTCAACAAGGCAGCTGAACTCGAATACGGAACTCTCGCCACGCTGCAACGCCAGCTGCAGGAGCAGGAAGACCTCT TGGAAGACGAGGACGGAACAGACAAAACCCTGCTGCGGGAGGAGGTCACCGAAGACGACATCGCTGAAGTGATTGCCAAG TGGACCGGCATCCCCGTGGCTCGCCTGGTGCAGAGCGAAATGGAGAAACTGCTGCAGCTGGAGGACGACCTGCATCAACG GGTGATCGGACAGAACCAGGCGGTCACTGCCGTTGCCGACGCGATTCAACGCTCAAGGGCAGGCCTCAGCGATCCCAACC GGCCCATCGCGAGCTTTCTGTTCCTCGGGCCGACGGGTGTCGGCAAGACGGAACTGTCCAAGGCGCTGGCCAATCGCCTG TTCGACAGCGACGACGCCATGGTGCGCATCGACATGTCGGAGTACATGGAGAAACACACCGTGAGCCGACTGATCGGTGC CCCTCCGGGCTATGTGGGTTATGAAGCCGGCGGCCAGCTCACGGAAGCGGTACGGCGACGGCCTTACGCCGTGATCCTGT TCGACGAGGTGGAGAAAGCCCACCCCGATGTGTTCAATGTGATGCTGCAGATCCTCGATGACGGCCGCGTTACCGACGGC CAGGGCCGCACGGTGGATTTCACCAACACCGTGTTGATCCTCACCAGCAACATCGGCAGCCAATCGATTCTTGAGCTGGC TGGGGATCCGGAGCAACACACGGCGATGGAGCAACGGGTCAACGAGGCGCTCAAGGCCAAATTCCGTCCCGAATTTCTCA ACAGGCTCGACGATCAGATCATCTTCCGCAGCCTTGAAAAAGAGGAGCTGCGCCGGATCGTGTCACTGCAGGTGGAGCGT CTGCGGTCGCGACTGGAGCAACGCAAGCTGGACCTTCAGCTCAGCGACATCGCAGCCGATTGGCTGGCCACCATTGGCTT TGACCCGGTTTACGGAGCAAGACCCCTCAAACGCGCCATCCAGCGGGAGCTGGAAACACCAATCGCCAAAGCGATCCTGG CGGGACAGCTCAGTGAGGGACAGACGGTGCAGGTTGATGCAGGTGACGACAAACTCTCAATCAGTTGA Protein sequence : MPIRFVQDNRNSHMQPTAEQFTEQAWAAIVAAQQLAQASRHQQLETEHLLLALLRQNGLAGRILSKTGVDVTTFEASVEG HLQRLPSLGSAPDSVFLGRSLNKALDRAEQRRDGFGDSFIAIEHLLLALAEDDRCGRQLLSQAGVTTNTLKEAITAVRGN QTVTDQNPEATYESLAKYGRDLTAAARDGQLDPVIGRDEEIRRTIQILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNG DVPQALQNRQLITLDMGALIAGAKYRGEFEERLKAVLKEVTTSDGQIVLFIDEIHTVVGAGASGGAMDASNLLKPMLARG ELRCIGATTLDEHRQHIEKDPALERRFQQVLVDQPTVPDTISILRGLKERYEVHHGVRIADSALVAAAMLSSRYITDRFL PDKAIDLVDESAARLKMEITSKPEQIDEIDRKILQLEMEKLSLGRESDSASQERLQRIERELAELGEQQSSLNAQWQSEK GAIDQLSALKEEIERVQLQVEQAKRNYDLNKAAELEYGTLATLQRQLQEQEDLLEDEDGTDKTLLREEVTEDDIAEVIAK WTGIPVARLVQSEMEKLLQLEDDLHQRVIGQNQAVTAVADAIQRSRAGLSDPNRPIASFLFLGPTGVGKTELSKALANRL FDSDDAMVRIDMSEYMEKHTVSRLIGAPPGYVGYEAGGQLTEAVRRRPYAVILFDEVEKAHPDVFNVMLQILDDGRVTDG QGRTVDFTNTVLILTSNIGSQSILELAGDPEQHTAMEQRVNEALKAKFRPEFLNRLDDQIIFRSLEKEELRRIVSLQVER LRSRLEQRKLDLQLSDIAADWLATIGFDPVYGARPLKRAIQRELETPIAKAILAGQLSEGQTVQVDAGDDKLSIS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 3e-103 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB1 | NP_897596.1 | endopeptidase Clp ATP-binding chain B | VFG2084 | Protein | 2e-110 | 43 |
