Gene Information

Name : SYNW1341 (SYNW1341)
Accession : NP_897434.1
Strain : Synechococcus sp. WH 8102
Genome accession: NC_005070
Putative virulence/resistance : Virulence
Product : ABC transporter substrate-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 1332496 - 1333431 bp
Length : 936 bp
Strand : -
Note : -

DNA sequence : 
ATGGCGTCGTTGAAAGGGGCGGTTCGGCATTGGTTCAGCCTGTTGCTGCTGGCCTTGGTCGCATTGGCCGGCTGCAGCAG
TCGCGATCCAGAGCAGCAAACCTTTGATGCCAGACCAACGGTTCTCACCAGCTTCACCGTGCTGGCCGATCTGGCACGCA
ATGTGGCCGGGGATCGCCTGCAGGTGCGATCCATCGTCAAGCCTGGAGCTGAAATCCACGGCTATCAGCCCACCCCCAGT
GACATTGAACGGGCCAGCTCCGCTGATCTGATTGTTGAAAACGGCCTCGGCCTGGAGCTCTGGTTCCGTCGATTCACGGC
CGCCGCTGGTGACGTGCCGACCCTCACCCTTGCGGAAGGGATGCAACCTCTGTTGATCACAGAGGATGCCTACGCCGGTA
AGCCCAATCCCCACGCCTGGATGTCGCCGCAGCGGACGATGCACTACGTGGATCGGTTGGTGGATGCTTTTTCAGACCTC
GATCCAGCTGGCGCTGAACAGTTCGCGGCCAATGCCGCCGTCTACAAGGCTGAGCTTCAGCAGTTGGACCGTGATCTGCG
CGACGCCCTTCAAACCATTCCGCCAGAGCGTCGGCTGTTGGTGACCTGTGAAGGGGCCTTCTCCTACCTGGCGCAGGACT
ATGGCTTCGAGGAGGCCTACCTCTGGCCGGTGAATGCGGAGAGTCAGGTCACGCCGAAACGGATGGCCCGCCTGATCGCG
ACCGTTCGGGAGCGTGACATTCCCACGATTTATTGCGAAAGCACGGTCTCCGACAAGGCGCAGCGCGAGGTGGCCGCTGC
CGCTGGGGCCCGCTTCGGGGGCAGCTTTTACGTTGATTCCCTCTCGGAGGCGGATGGACCGGCCGCCTCCTTGCTGGAGC
TCCAGCGTCACAATGTGGACCTGATCGGGACAGGACTTCTGGAGGTGCAGCGCTGA

Protein sequence : 
MASLKGAVRHWFSLLLLALVALAGCSSRDPEQQTFDARPTVLTSFTVLADLARNVAGDRLQVRSIVKPGAEIHGYQPTPS
DIERASSADLIVENGLGLELWFRRFTAAAGDVPTLTLAEGMQPLLITEDAYAGKPNPHAWMSPQRTMHYVDRLVDAFSDL
DPAGAEQFAANAAVYKAELQQLDRDLRDALQTIPPERRLLVTCEGAFSYLAQDYGFEEAYLWPVNAESQVTPKRMARLIA
TVRERDIPTIYCESTVSDKAQREVAAAAGARFGGSFYVDSLSEADGPAASLLELQRHNVDLIGTGLLEVQR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 5e-59 52
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 5e-59 52
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 5e-59 52
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 3e-59 52
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-59 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SYNW1341 NP_897434.1 ABC transporter substrate-binding protein BAC0349 Protein 2e-59 52
SYNW1341 NP_897434.1 ABC transporter substrate-binding protein BAC0439 Protein 1e-54 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SYNW1341 NP_897434.1 ABC transporter substrate-binding protein VFG0525 Protein 2e-59 52