Gene Information

Name : SYNW1340 (SYNW1340)
Accession : NP_897433.1
Strain : Synechococcus sp. WH 8102
Genome accession: NC_005070
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 1331741 - 1332496 bp
Length : 756 bp
Strand : -
Note : -

DNA sequence : 
ATGCGGATCGAGGCAGATCAGCTCTGCGTTGACTACAACGGCACCGTGGCGCTGTATGACGCCAGCCTGCACCTGCCCGC
TGGTTGCATCTGCGGCCTGGTGGGGATGAACGGTGCCGGCAAGTCCACCTTGTTCAAAGCTCTCACCGGCTTTGTCCGTC
CATCCCGTGGGCGCATCCGTATCAATGGTGCCCCAGTCGCTGAGGCCCAGCGGCAGCAGTCGGTGGCCTATGTGCCCCAG
AGCGAGGGGATCGACAGTCAGTTCCCTGTCTCCGTCTGGGATGTGGTGATGATGGGGCGCTACGGCGCCATGAATCTGCT
GCGCATTCCCCGCAGTTCCGATCGGGTGGCTGTGCGCGATGCCCTGAAGCGGGTGGATCTGTTTGACCTTCGCTCAAGGC
CGATCGGAGCCCTCTCCGGTGGACAGCGCAAACGCACTTTTCTGGCTCGGGCGATCGCGCAGCGTGCCGATGTGCTCCTG
CTGGATGAACCCTTCAACGGCGTTGACGTGCGCACTGAAAAGTTGATGGCGGAGCTGTTCATTCAGTTCCGTGAGGACGG
CCGCACGATCCTGATCTCTACCCATGACCTGAGTCATGTGCGCGAGTTCTGCGATCTCGTGGTGTTGATCAACAAAACCG
TTCTGGCCTACGGCGAAACCTCCGAGGTGTTCACCCCAGAGAATCTCGCCATGACGTTCGGCGGGTTGCCGCCGGATCTG
TTGACCGGCAACAGCTCCAGCGACGATTCCCATTAA

Protein sequence : 
MRIEADQLCVDYNGTVALYDASLHLPAGCICGLVGMNGAGKSTLFKALTGFVRPSRGRIRINGAPVAEAQRQQSVAYVPQ
SEGIDSQFPVSVWDVVMMGRYGAMNLLRIPRSSDRVAVRDALKRVDLFDLRSRPIGALSGGQRKRTFLARAIAQRADVLL
LDEPFNGVDVRTEKLMAELFIQFREDGRTILISTHDLSHVREFCDLVVLINKTVLAYGETSEVFTPENLAMTFGGLPPDL
LTGNSSSDDSH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 3e-57 56
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 3e-57 56
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-56 55
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 4e-56 55
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 3e-56 55

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SYNW1340 NP_897433.1 ABC transporter ATP-binding protein BAC0350 Protein 2e-56 55
SYNW1340 NP_897433.1 ABC transporter ATP-binding protein BAC0440 Protein 6e-64 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SYNW1340 NP_897433.1 ABC transporter ATP-binding protein VFG0526 Protein 2e-56 55