Gene Information

Name : SYNW1337 (SYNW1337)
Accession : NP_897430.1
Strain : Synechococcus sp. WH 8102
Genome accession: NC_005070
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1329101 - 1329985 bp
Length : 885 bp
Strand : -
Note : -

DNA sequence : 
ATGGTTGAGGATGAACACCACCCTGTCTTGCCCTGCATGGATTGGCTGTTGGAGCCCCTCAGTCATGCCTTCATGGTGAG
AGCGCTGTTGGTCAGTGCTCTGGTGGGGGGCGTCTGCGGATTGCTGTCCTGCTACATGACCCTGAAGGGTTGGGCGCTGA
TGGGGGATGCTGTGTCCCATGCGGTGTTGCCCGGAGTGGTGGTGGCCTACGCCCTGGGTCTGCCCTTTTCGCTTGGGGCG
TTTGTGTTCGGGGTGGGTTCGGTGGCGGCGATCGGCTTTGTGAAGCAGAAGTCCCGGGTCAAGGAAGACACCGTGATCGG
TCTGGTGTTCACGGGGTTTTTTGCTCTCGGTCTGGTGCTGGTGTCCAAGACCCGCAGCAACATTGACCTCACCCACATTC
TGTTCGGCAACGTCCTCGGCATCACAGCCGGAGACATTCAGCAGACGCTGCTGATTTCAGCGCTTGTGCTGCTGCTGCTG
TTGCTGTTCCGGCGGGATCTGATGCTGTTCTGCTTCGACCCCACCCACGCCCGCTCGATCGGGATCAACACGGGTGTTCT
GCATTACATGTTGCTTGGCCTGCTCTCCCTGGCGGCGGTGGTTGGCCTGCAGACGGTGGGCATCATTCTGGTGGTGGCGA
TGCTGGTGACACCTGGCGCCACGGCCTATCTGCTCACCGATCGCTTTGATCGCATGACGGTTCTGGCGGTGATCAGCAGC
GTTCTGTCGAGTGTCTTCGGTGTGTTCGTCAGCTACTGGACCGACAGCTCCACCGCCGGTTGCATCGTCTTGGTTCAAAC
AGCGCAGTTTCTGCTGGCCTTCCTGTTTGCACCGCGCCATGGCGTGTTGAGGCGGTCCCAGGGGCAGTTGACTGGTGACC
TCTGA

Protein sequence : 
MVEDEHHPVLPCMDWLLEPLSHAFMVRALLVSALVGGVCGLLSCYMTLKGWALMGDAVSHAVLPGVVVAYALGLPFSLGA
FVFGVGSVAAIGFVKQKSRVKEDTVIGLVFTGFFALGLVLVSKTRSNIDLTHILFGNVLGITAGDIQQTLLISALVLLLL
LLFRRDLMLFCFDPTHARSIGINTGVLHYMLLGLLSLAAVVGLQTVGIILVVAMLVTPGATAYLLTDRFDRMTVLAVISS
VLSSVFGVFVSYWTDSSTAGCIVLVQTAQFLLAFLFAPRHGVLRRSQGQLTGDL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 8e-51 50
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 8e-51 50
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-51 50
sitC NP_461784.1 permease Virulence SPI-1 Protein 7e-51 50
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 5e-51 50
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-41 48
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 5e-42 48
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-41 48
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-42 48
sitD NP_461785.1 permease Virulence SPI-1 Protein 6e-42 48
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 8e-38 43
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 6e-38 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SYNW1337 NP_897430.1 ABC transporter BAC0351 Protein 3e-51 50
SYNW1337 NP_897430.1 ABC transporter BAC0442 Protein 5e-49 49
SYNW1337 NP_897430.1 ABC transporter BAC0352 Protein 3e-42 48
SYNW1337 NP_897430.1 ABC transporter BAC0441 Protein 2e-44 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SYNW1337 NP_897430.1 ABC transporter VFG0527 Protein 3e-51 50
SYNW1337 NP_897430.1 ABC transporter VFG0528 Protein 3e-42 48