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Name : lysS (SYNW0127) Accession : NP_896222.1 Strain : Synechococcus sp. WH 8102 Genome accession: NC_005070 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 124707 - 126215 bp Length : 1509 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : GTGTCTGAGCTGCGCGACACCCGTTTGGAGAAGTGCCAGGCACTGTCTGATCTGGGCCAGGGTCCCTACGCCCTCAACTT TGAGCCGACCCATCGCATGGCGGCCTTGCATGAGGCCCATGCCGACCTCCCCAATGGCGAGGAACGTGAGGTGACGGTGT CCGTCGCCGGGCGGGTGATGACCCGGCGGGTGATGGGCAAGCTCGCCTTTTTCACCCTGGCGGATGAGACCGGCACCATT CAGCTGTTTCTGGAGAAAGCGGGCCTGGAGGCGCAGCAGGAGGGCTGGTTCAAGCAGATCACCGGTCTGGTCGATGGCGG CGACTGGCTTGGGGTGAGCGGCACGCTGCGCCGCACCGATCGCGGTGAGTTGTCGGTGAAGGTGAGCGATTGGCGCATGC TCACCAAGGCGCTGCAACCGCTGCCGGATAAGTGGCACGGCCTGGCCGATGTGGAGAAGCGCTACCGCCAGCGCTATCTC GACCTCATCGTGTCGCCGGACAGCCGGGAGACTTTCCGCCGCCGGGCACGGTTGGTGAGCGGCATCCGCCGCTGGCTGGA TCAACGTGATTTTCTCGAAATTGAGACTCCGGTGCTGCAGAGCGAACCGGGCGGTGCCGATGCTCGGCCCTTCGAGACCC ACCACAACGCTCTTGATCTTCCCCTCACCCTGCGCATCGCCACCGAACTGCATCTCAAACGCCTGGTGGTGGGTGGCTTC GAGCGGGTGTACGAGCTGGGCCGGATCTTTCGCAATGAAGGGGTCAGCACCCGCCACAACCCGGAATTCACCTCGGTGGA GATCTATCAGGCCTACTCCGATTACATCGGAATGATGGAGCTCACTGAGCAGATGGTCAGCGCCGTTTGCCAGGAGGTGT GCGGCAGTTGCCAGATCACGTACCAGGACACCGAGATTGATCTCAGCCCCCCCTGGCGACGGGCCACCATGCATGAGCTA GTGGAGGAAGCCACCGGTCTTGATTTCAATAGCTTCAGCAGTCGGGAGGCGGCGGCTGTAGCGATGACCGGCAAGGGCCT GCATGCACCTGAACTGGCCGATTCCGTGGGGCGTCTGCTGAATGAAGCGTTCGAGCAGGCGGTGGAGACAACGCTGATTC AACCCACCTTTGTGACCGATTACCCGGTGGAGATTTCACCGTTGGCCCGGCCTCACCGCAGCAAACCCGGCCTGGTGGAA CGTTTTGAGCTGTTCATCGTTGGCCGCGAGCATGCCAATGCCTTCAGTGAGCTCACCGATCCGGTGGATCAGCGGCAGCG CCTGGAGGCCCAGCAGGCCCGTAAGGCTGCCGGGGATCTCGAAGCGCAGGGGTTGGATGAAGACTTCGTCACGGCCCTCG AGGTGGGCATGCCTCCCACCGGTGGGTTGGGTATTGGTATCGATCGTTTGGTGATGCTGCTCACGGATAGCCCATCGATC CGTGATGTCATTGCCTTCCCGCTTCTGCGGCCGGAGCCCAGGGCGGCGGATGCCCCCGCAATGGGATAA Protein sequence : MSELRDTRLEKCQALSDLGQGPYALNFEPTHRMAALHEAHADLPNGEEREVTVSVAGRVMTRRVMGKLAFFTLADETGTI QLFLEKAGLEAQQEGWFKQITGLVDGGDWLGVSGTLRRTDRGELSVKVSDWRMLTKALQPLPDKWHGLADVEKRYRQRYL DLIVSPDSRETFRRRARLVSGIRRWLDQRDFLEIETPVLQSEPGGADARPFETHHNALDLPLTLRIATELHLKRLVVGGF ERVYELGRIFRNEGVSTRHNPEFTSVEIYQAYSDYIGMMELTEQMVSAVCQEVCGSCQITYQDTEIDLSPPWRRATMHEL VEEATGLDFNSFSSREAAAVAMTGKGLHAPELADSVGRLLNEAFEQAVETTLIQPTFVTDYPVEISPLARPHRSKPGLVE RFELFIVGREHANAFSELTDPVDQRQRLEAQQARKAAGDLEAQGLDEDFVTALEVGMPPTGGLGIGIDRLVMLLTDSPSI RDVIAFPLLRPEPRAADAPAMG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 5e-104 | 48 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 3e-80 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | NP_896222.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-104 | 48 |
