Gene Information

Name : yscR (CpB0854)
Accession : NP_877126.1
Strain : Chlamydophila pneumoniae TW-183
Genome accession: NC_005043
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 929997 - 930917 bp
Length : 921 bp
Strand : -
Note : secretion protein; similar to yscR secretion protein - Yersinia pestis

DNA sequence : 
ATGCGATCCATTTTTCGATTTTCCCTTTGTTTTTTTACGCTGAGCGTCTCATGCTGTTTTGCTGACGCCAGTCTATATGA
AAACTCCTGTCCCTCGCGTTGTCAACCTACCCCTCCTCCCTCGAATTCTAATCCTTTGAACGTAGTACAACAGCCTGTTG
CTGCATCGTCAGTGCCTTCCTACATGCCCCCACTGAATGCTGATGATGTTCTCCCTAGAGACCATCTGTCAGATGGAAGT
TTCTCAGATACGTATCCAGACATTACAACGCAAGCGATCATCTTAATTTTCTTGGCCCTATCGCCTTTCCTGGTCATGTT
GCTCACTTCGTATCTAAAGATTATCATTACTTTAGTCTTATTACGTAACGCCTTAGGAGTACAACAAACACCTCCCAGTC
AAGTCCTCAATGGGATTGCACTCATCCTATCTATTTATGTGATGTTCCCCACGGGAGTGGCTATGTATAAAGATGCTCGC
AAGGAAATCGAAGCCAATACCATTCCTCAAAGCCTCTTCACTGCAGAAGGTGCTGAAACAGTGTTTGTCGCTTTAAACAA
ATCTAAAGAACCTTTGCGCTCTTTCTTAATTCGCAACACTCCAAAAGCACAAATTCAAAGCTTTTACAAGATCTCACAGA
AAACCTTCCCTTCGGAAATTCGAGCGCACCTCACTGCCTCCGACTTTGTAATCATTATTCCTGCTTTTATTATGGGTCAG
ATAAAAAATGCTTTCGAAATTGGAGTCTTGATCTATCTACCTTTCTTTGTTATTGATTTAGTGACTGCTAACGTTCTTGT
AGCGATGCAGATGATGATGTTATCCCCTCTATCGATTTCGTTACCTTTAAAGTTACTTTTGATCGTCATGGTAGACGGAT
GGACATTACTGCTCCAAGGGCTTATGATCAGCTTTAAATAA

Protein sequence : 
MRSIFRFSLCFFTLSVSCCFADASLYENSCPSRCQPTPPPSNSNPLNVVQQPVAASSVPSYMPPLNADDVLPRDHLSDGS
FSDTYPDITTQAIILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGVAMYKDAR
KEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFYKISQKTFPSEIRAHLTASDFVIIIPAFIMGQ
IKNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLIVMVDGWTLLLQGLMISFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 7e-33 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 7e-33 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 6e-33 41
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 4e-26 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 6e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscR NP_877126.1 type III secretion system protein VFG2131 Protein 4e-90 86
yscR NP_877126.1 type III secretion system protein VFG2016 Protein 2e-24 41