|
Name : xcpR (CpB0845) Accession : NP_877117.1 Strain : Chlamydophila pneumoniae TW-183 Genome accession: NC_005043 Putative virulence/resistance : Virulence Product : XcpR Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 922938 - 924428 bp Length : 1491 bp Strand : + Note : secretion protein; similar to secretion protein xcpR - Pseudomonas aeruginosa DNA sequence : ATGGCTGCTAGTATTTTATCTCAGGAGCTTTTGGATATCCTTCCTTATACTTTTTTAAAGAAACACTGTCTTCTCCCTAT TGAAGAGAGTAGTGAGGCTATTACTATAGCCCATGCTACCGCGACTTCAGTCATTGCTCAAGATGAAGTCAAATTGTTAA TAAAAAAGCCTGTGCGTTTCGTTCTAAAAGAGGAATCGGAGATTCTGCAGCGCTTACAGCAGCTCTACAGCAATCGGGAA GGTAATGTTTCCGATATGTTGTTAACAATGAAAGAGGAAGATGGCACTACGATTTCGGAAGAAGAAGATCTTCTGGAGAC TACGGATACGATCCCAGTCGTACGCTTGTTGAACTGGATTCTGAAAGAAGCGATTGAAGAGCGCGCTTCGGACATTCATT TTGAGCCTTGTGAGGATTCTATGAGAATCCGCTACCGCATTGATGGTGTGCTTCACGATCGTCATTCCCCACCTTCCCAC CTGCGTTCGGCATTAACCACTCGGCTTAAAGTCCTCGCAAAGATGGATATTGCGGAGCACCGTCTTCCTCAAGACGGGCG TATTAAGATCCATATTGGTGGTCAGGAAGTGGACATGCGTGTCAGCACGGTTCCCGTGATTTATGGCGAGCGTGTTGTTC TTCGTATTTTAGATAAGCGCAATGTCATTTTGGATATCGCGGGCTTGCATATGCCTAAGGGTACCGAAATACTCTTTAAA GATACCATAACAGCTCCTGAAGGGATCCTTCTGGTTACAGGACCTACAGGCAGTGGGAAAACTACGACCCTCTACAGTGT ATTACAAGAGCTTAAGGGACCTTTAACAAATATCATGACGATCGAAGATCCTCCAGAGTATAAACTGCCTGGAATTGCTC AGATTGCTGTGAAGCCTAAAATTGGGCTGACTTTCGCACGAGGGTTACGGCATTTACTGCGTCAAGATCCCGATATCCTT ATGGTCGGAGAAATCCGAGATCAGGAAACTGCAGAAATCGCAATACAAGCAGCATTGACTGGGCATTTGGTAGTGAGCAC GCTCCATACGAATGACGCTATTTCTGCGATTCCCCGTCTTCTGGATATGGGGATAGAATCCTATTTGTTATCGGCAACGC TCGTTGGCGTGGTTGCCCAGAGGCTGGTGCGAACCATTTGTCCCTATTGTAAGGTCGCTTATACTCCTGAGAATCAGGAA AAATCTTTTCTAGCTTCTCTAGGGAAAGATACAGAAATGCCTTTATATCGGGGGCAAGGGTGCGTGCATTGTTTCCGTTC CGGATATAAAGGAAGACAGGGAATTTACGAATTTTTACGCCCGAATACACTATTTCGTTCAGAAGTAGCCTCAAACCGCC CCTATCATATTTTACGAGAAACTGCAGAACAAAACGGATTCTTACCGATCTTAGAGCACGGCATCGCTCTTGCTGTATCT GGTGAGACTACCTTAGCAGAAGTCTTAAGAGTTACCAAGCGCTGTGATTAG Protein sequence : MAASILSQELLDILPYTFLKKHCLLPIEESSEAITIAHATATSVIAQDEVKLLIKKPVRFVLKEESEILQRLQQLYSNRE GNVSDMLLTMKEEDGTTISEEEDLLETTDTIPVVRLLNWILKEAIEERASDIHFEPCEDSMRIRYRIDGVLHDRHSPPSH LRSALTTRLKVLAKMDIAEHRLPQDGRIKIHIGGQEVDMRVSTVPVIYGERVVLRILDKRNVILDIAGLHMPKGTEILFK DTITAPEGILLVTGPTGSGKTTTLYSVLQELKGPLTNIMTIEDPPEYKLPGIAQIAVKPKIGLTFARGLRHLLRQDPDIL MVGEIRDQETAEIAIQAALTGHLVVSTLHTNDAISAIPRLLDMGIESYLLSATLVGVVAQRLVRTICPYCKVAYTPENQE KSFLASLGKDTEMPLYRGQGCVHCFRSGYKGRQGIYEFLRPNTLFRSEVASNRPYHILRETAEQNGFLPILEHGIALAVS GETTLAEVLRVTKRCD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 4e-88 | 45 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-88 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| xcpR | NP_877117.1 | XcpR | VFG0182 | Protein | 6e-91 | 52 |
| xcpR | NP_877117.1 | XcpR | VFG2426 | Protein | 8e-72 | 46 |
| xcpR | NP_877117.1 | XcpR | VFG1876 | Protein | 3e-90 | 45 |
| xcpR | NP_877117.1 | XcpR | VFG2048 | Protein | 1e-88 | 45 |
| xcpR | NP_877117.1 | XcpR | VFG1880 | Protein | 3e-77 | 44 |
