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Name : lcrD (CpB0333) Accession : NP_876609.1 Strain : Chlamydophila pneumoniae TW-183 Genome accession: NC_005043 Putative virulence/resistance : Virulence Product : low calcium response D Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 364745 - 366877 bp Length : 2133 bp Strand : + Note : similar to low calcium response D lcrD protein - Yersinia enterocolitica DNA sequence : ATGAATAAGCTACTCAATTTCGTCAGCAGAACACTTGGTGGCGATACCGCCTTAAACATGATCAATAAGTCCAGCGACTT AATCCTTGCTCTTTGGATGATGGGCGTTGTCTTAATGATCATTATTCCTTTGCCTCCGCCTATCGTTGACTTGATGATCA CCATCAACTTATCGATCTCTGTATTCTTATTGATGGTGGCTCTTTATATTCCAAGTGCTTTGCAGCTGTCTGTTTTTCCC TCGTTGCTCCTCATCACTACGATGTTCCGCTTGGGGATTAATATTTCCTCTTCTCGACAGATTCTCCTTAAAGCGTATGC GGGTCATGTCATTCAGGCCTTCGGAGACTTCGTGGTTGGAGGGAACTATGTGGTCGGGTTCATTATCTTCCTCATTATTA CAATCATTCAGTTTATCGTAGTAACTAAGGGTGCCGAGCGTGTTGCCGAAGTTGCTGCCCGATTCCGATTGGATGCGATG CCAGGTAAACAGATGGCGATTGATGCGGACTTACGAGCTGGTATGATTGATGCCACACAAGCTCGTGATAAAAGGGCTCA AATCCAAAAGGAAAGTGAACTCTACGGAGCCATGGACGGTGCCATGAAGTTCATCAAAGGAGACGTTATCGCTGGTATCG TTATCTCTTTGATTAACATTGTTGGCGGTTTGACGATTGGGGTGGCTATGCACGGCATGGACCTCGCTCAAGCAGCTCAC GTCTACACTCTTCTCTCCATTGGAGATGGTTTAGTCTCTCAAATTCCTTCTCTTTTGATTGCGTTGACAGCGGGTATTGT CACGACTCGTGTATCGAGTGACAAAAATACGAACTTGGGTAAAGAGATTTCTACTCAGCTCGTTAAAGAACCACGAGCAC TACTCCTTGCAGGTGCTGCAACTTTAGGGGTTGGTTTCTTCAAGGGCTTCCCTCTATGGTCCTTCTCCATTTTAGCATTA ATTTTCGTTGCCTTAGGGATTCTCCTACTGACTAAGAAATCAGCGGCAGGAAAAAAAGGTGGTGGCTCAGGAGCTTCAAC AACCGTAGGGGCTGCTGGTGATGGCGCTGCTACTGTTGGGGATAATCCCGATGACTATTCTCTAACTCTTCCCGTAATTC TAGAACTTGGAAAAGATCTCTCTAAGCTTATCCAACACAAGACAAAATCAGGACAAAGCTTTGTTGATGATATGATTCCT AAAATGCGGCAAGCTCTCTATCAGGATATCGGAATCCGATACCCTGGCATTCATGTTCGCACAGATTCCCCTTCTTTAGA AGGATACGATTATATGATTCTGCTTAATGAAGTCCCTTATGTGCGAGGAAAAATTCCTCCGCACCATGTGTTAACCAATG AGGTGGAGGACAATCTCAGCCGTTATAATCTACCTTTCATTACCTATAAGAATGCTGCGGGTCTTCCTTCAGCTTGGGTT AGTGAAGATGCAAAAGCTATTCTAGAGAAGGCAGCAATTAAATATTGGACGCCGCTCGAAGTGATCATTCTCCATCTTTC GTACTTTTTCCATAAAAGCTCTCAAGAGTTTTTGGGAATTCAAGAGGTACGTTCTATGATCGAATTTATGGAACGTTCAT TCCCGGACTTAGTGAAGGAAGTCACAAGGCTTATTCCATTGCAAAAGCTTACGGAAATCTTTAAGAGATTGGTTCAAGAG CAAATCTCAATTAAAGACCTACGTACAATCTTAGAATCTCTGAGCGAGTGGGCGCAAACTGAGAAAGATACAGTTTTGCT TACAGAATATGTACGGTCTTCTTTAAAGCTTTATATCAGCTTCAAGTTCTCTCAAGGACAATCAGCAATTTCTGTTTATC TCTTAGATCCAGAAATTGAAGAGATGATTCGTGGAGCAATTAAACAGACATCGGCAGGTTCTTACCTTGCTCTAGATCCT GATTCTGTGAACCTAATTTTAAAATCTATGAGGAATACGATCACGCCAACACCTGCAGGAGGCCAACCACCAGTATTATT GACAGCAATTGATGTAAGAAGATATGTACGAAAATTAATAGAAACAGAATTCCCTGACATTGCTGTGATTTCTTATCAAG AAATCCTACCAGAAATCCGCATCCAGCCTTTAGGAAGAATTCAGATTTTCTAA Protein sequence : MNKLLNFVSRTLGGDTALNMINKSSDLILALWMMGVVLMIIIPLPPPIVDLMITINLSISVFLLMVALYIPSALQLSVFP SLLLITTMFRLGINISSSRQILLKAYAGHVIQAFGDFVVGGNYVVGFIIFLIITIIQFIVVTKGAERVAEVAARFRLDAM PGKQMAIDADLRAGMIDATQARDKRAQIQKESELYGAMDGAMKFIKGDVIAGIVISLINIVGGLTIGVAMHGMDLAQAAH VYTLLSIGDGLVSQIPSLLIALTAGIVTTRVSSDKNTNLGKEISTQLVKEPRALLLAGAATLGVGFFKGFPLWSFSILAL IFVALGILLLTKKSAAGKKGGGSGASTTVGAAGDGAATVGDNPDDYSLTLPVILELGKDLSKLIQHKTKSGQSFVDDMIP KMRQALYQDIGIRYPGIHVRTDSPSLEGYDYMILLNEVPYVRGKIPPHHVLTNEVEDNLSRYNLPFITYKNAAGLPSAWV SEDAKAILEKAAIKYWTPLEVIILHLSYFFHKSSQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQE QISIKDLRTILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAGSYLALDP DSVNLILKSMRNTITPTPAGGQPPVLLTAIDVRRYVRKLIETEFPDIAVISYQEILPEIRIQPLGRIQIF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 2e-131 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lcrD | NP_876609.1 | low calcium response D | VFG2126 | Protein | 0.0 | 91 |
| lcrD | NP_876609.1 | low calcium response D | VFG0064 | Protein | 3e-131 | 47 |
| lcrD | NP_876609.1 | low calcium response D | VFG0384 | Protein | 2e-129 | 46 |
