Gene Information

Name : lysS (RB10883)
Accession : NP_869666.1
Strain : Rhodopirellula baltica SH 1
Genome accession: NC_005027
Putative virulence/resistance : Virulence
Product : lysyl-tRNA synthetase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1190
EC number : 6.1.1.6
Position : 5907588 - 5909228 bp
Length : 1641 bp
Strand : +
Note : best DB hits: BLAST: swissprot:Q53638; SYK_STAAU LYSYL-TRNA SYNTHETASE (LYSINE--TRNA; E=1e-116 swissprot:P37477; SYK_BACSU LYSYL-TRNA SYNTHETASE (LYSINE--TRNA; E=1e-114 swissprot:Q9KGG4; SYK_BACHD LYSYL-TRNA SYNTHETASE (LYSINE--TRNA; E=1e-111 COG: BS_lysS

DNA sequence : 
GTGAATGAGGCGGCAAATTCACAATCGTCAGCCCGATTGATTGTTTCCACCTTCGCAAGTGCATTTGCCGTGACCGATAC
GCCTTCCAACGCTGACGACCTTGATTTGACCGACCCGCACGCGGCTCGTCGGCACAAACTGGAAGAAATCACCGCGAAAG
GCATCGATCCCTGGGGCCAGCGTTTCGACGACCGTTTGCTGGTCAGCGAGTGCCGCGACCGGATTCCACAAATCCAGTGG
CAGCAAAAGGACGGCGAAACAATCGCTCTGCCCGACGTTGAAAGCGACGAAGTCGATTACCGCCAATGGAAAGCCGACAA
CGGCCCAGGCGAGGAAATCGGCCCGATCGTTCGCGTTGCCGGACGGATTTTGTTGGCCCGGCCGACCGGCAAGTTGATCT
TCATGAATATCCGCGACTGGACCGGCGACATCCAGATCTTTGTCGGCAAGAAGCAAGTCGGCGACGAAAACTTTGATCTG
GCCAAACTGTTTGACCTGGGCGATTTGATCGGTGTTCAAGGGCGACTGGGCCGCACCAACACGGGCGAGCTGACCGTGTT
CGCGGAAGAGCTGTTCTTGCTGACGAAGATGTTGGAAGTCCCGCCGGAAAAGCACGCCGGGATGACCAATCAAGACCTGC
GTCAACGGATGCGGTATGCCGACTTGGCGTTCAACGATGGCGTGATGCAAACATTCCTCGATCGCACCAAAATCATCAAA
AGCATTCGCTCGACGCTGGACGACCAAGGTTTCTGCGAAGTCGAAGGCCCGACGCTGCACACCGTTCCCGGTGGCGCCGC
TGCTCGTCCGTTTGAAACGCATCACAACGCGTTGGACATGCAGTTGACCATGCGGATCGCGTTGGAGCTGCACCTCAAGC
GATTGATGGTCGGCGGGATGGAACGCGTTTACGAACTGGGACGCGTCTATCGCAACGAAGGTTTGTCACCACGGCACAAC
CCCGAGTTCACGATGCTGGAAACCTATCAGGCGTACGGCAACTACGAATCCATGATGGATCTGACTGAAAAGATCATCTG
TGACGCGATCGAAAAGATCGGCGGCGGATTCAAACGTGAATACAACGGCACGATGTTGGACTTCACTCCACCGTTCCAGC
GTGCGACGTATGCGGAGTTGTTCCAGAAGGCCACCGGCATCGATCCCGCTAACGAAGACGCGGTCAAGGAATACGCCAAG
GGGCTGAAGCTGACCATCGAAGGCAAACACCCCGATGTGATCCGCAACGAGATCTTCGAAGAGAAGGTCGAAGATTCATT
GCAAGGCCCGATCTTCGTGACGGACTATCCCGCCAGCATTTGCCCGCTAACCAAACGCAAGAAGGACAACCCCGAAATCG
CCGAGCGTTTCGAGATGTTCATTTGCGGGATGGAATTGGCCAACGCTTACACCGAACTGAACGATCCCGACCTGCAAGAA
GAGTTGTTCAAGACTCAACTCGAAGGTCAGGACGACGAAGACTCGATGGCCAAAATGGACCACGACTTCGTCCGCGCGTT
GCGTTACGGGATGCCGCCCGCTGGCGGATTGGGGATTGGCATCGACCGCTTGGTGATGGTTCTGACGAACCAAAAATCCA
TCCGCGACGTGATCCTGTTCCCCGTGCTTCGCCCTGAATGA

Protein sequence : 
MNEAANSQSSARLIVSTFASAFAVTDTPSNADDLDLTDPHAARRHKLEEITAKGIDPWGQRFDDRLLVSECRDRIPQIQW
QQKDGETIALPDVESDEVDYRQWKADNGPGEEIGPIVRVAGRILLARPTGKLIFMNIRDWTGDIQIFVGKKQVGDENFDL
AKLFDLGDLIGVQGRLGRTNTGELTVFAEELFLLTKMLEVPPEKHAGMTNQDLRQRMRYADLAFNDGVMQTFLDRTKIIK
SIRSTLDDQGFCEVEGPTLHTVPGGAAARPFETHHNALDMQLTMRIALELHLKRLMVGGMERVYELGRVYRNEGLSPRHN
PEFTMLETYQAYGNYESMMDLTEKIICDAIEKIGGGFKREYNGTMLDFTPPFQRATYAELFQKATGIDPANEDAVKEYAK
GLKLTIEGKHPDVIRNEIFEEKVEDSLQGPIFVTDYPASICPLTKRKKDNPEIAERFEMFICGMELANAYTELNDPDLQE
ELFKTQLEGQDDEDSMAKMDHDFVRALRYGMPPAGGLGIGIDRLVMVLTNQKSIRDVILFPVLRPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 2e-85 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lysS NP_869666.1 lysyl-tRNA synthetase VFG1668 Protein 1e-85 45