Gene Information

Name : lolD (RB6883)
Accession : NP_867512.1
Strain : Rhodopirellula baltica SH 1
Genome accession: NC_005027
Putative virulence/resistance : Resistance
Product : lipoprotein releasing system ATP-binding protein LolD
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3657855 - 3658622 bp
Length : 768 bp
Strand : +
Note : PMID: 10783239 best DB hits: BLAST: gb:AAG34709.1; AF320001_2 (AF320001) ATP binding protein; E=5e-49 swissprot:P45247; LOLD_HAEIN LIPOPROTEIN RELEASING SYSTEM; E=3e-45 gb:AAG18646.1; (AE004970) amino acid ABC transporter, ATP-binding; E=3e-45 COG: HI1549

DNA sequence : 
ATGCATTCCTCGCCTGAACTGCTGTTGGAAGCCCGTGGAATTCGCAAGAGTTACCACAAGGACAAGATCGAATTGCCGAT
TCTTCGCGGCATTGATGTTGGATTTGTGACGGGCGAAATGTCAGCACTCGTCGGACGAAGCGGAAGCGGCAAGAGCACGT
TGATGCACCTGCTGGCGACGCTCGACCAACCCGACTCGGGCGAAGTGTGGTTCGATGGAACTCGCATTGACAACCAAAGT
CGTGCACGTCGGGACCAATATCGCAACTCACAGATCGGAATCATCTTTCAGTTCTATCATTTGCTGCCGGAACTGTCCGC
GATCGAAAACGTTTTGGCACCCGCCATGATTCGCCGCAGCGTTCTGGGTTACCTTCGCGATCGCAAGTCTTTGCGACTTC
GCGCCGAAGCAATGCTGGACCGAGTCGGATTGCTCACTCGAAGCCATCACCAACCATCCGAAATGTCGGGCGGCGAAATG
CAACGTGTGGCCATTGCAAGATCGTTGATGTCCAACCCCAAGCTGTTGCTCGCAGATGAACCGACCGGAAACTTAGACAC
AGAAACCGGAGCGACGATCCTGAGTCTGCTTCGCGAGTTGAACCGCGAAGACGAATTGACGATCGTGATGATCACCCACG
ACGATTCAATCGCTGAAACGGCAGATCGCTGCTACCGAATGTGCGACGGATTGTTGGAAGACAACGCATCAAACTTAGCC
GGTGGCGACCGCTCGGATTCAGCCAAACTAGAAACCGTCGCCGCCTAA

Protein sequence : 
MHSSPELLLEARGIRKSYHKDKIELPILRGIDVGFVTGEMSALVGRSGSGKSTLMHLLATLDQPDSGEVWFDGTRIDNQS
RARRDQYRNSQIGIIFQFYHLLPELSAIENVLAPAMIRRSVLGYLRDRKSLRLRAEAMLDRVGLLTRSHHQPSEMSGGEM
QRVAIARSLMSNPKLLLADEPTGNLDTETGATILSLLRELNREDELTIVMITHDDSIAETADRCYRMCDGLLEDNASNLA
GGDRSDSAKLETVAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-31 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-30 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-30 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD NP_867512.1 lipoprotein releasing system ATP-binding protein LolD CP001581.1.gene798.p Protein 5e-39 45
lolD NP_867512.1 lipoprotein releasing system ATP-binding protein LolD NC_012469.1.7686878. Protein 9e-37 44