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Name : clpC (RB6751) Accession : NP_867440.1 Strain : Rhodopirellula baltica SH 1 Genome accession: NC_005027 Putative virulence/resistance : Virulence Product : negative regulator of genetic competence ClpC/MecB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 3586111 - 3588690 bp Length : 2580 bp Strand : + Note : PMID: 8016066 best DB hits: BLAST: pir:T36384; probable ATP-binding proteinase - Streptomyces; E=0.0 swissprot:P37571; CLPC_BACSU NEGATIVE REGULATOR OF GENETIC; E=0.0 ddbj:BAB03822.1; (AP001507) class III stress response-related; E=0.0 COG: BS_clpC; COG05 DNA sequence : ATGTACGAACGGTTTACTGACCGAGCCAGGAAAGTCATGCAATTGGCTAACCAAGAGGCTCAACGATTCAATCACGAATA CATCGGCACCGAACACATTTTGTTGGGTTTGGTGAAAGAGGGCAGCGGCGTTGCTGCCAACGTATTGAAAAATCTCGAGG TCGATCTGCGAAAAATTCGCCTCGAAGTCGAGAAATTGGTGCAAAGCGGGCCTGAAATGGTGACCGTTGGCAAATTGCCA CAGACACCACGTGCGAAGAAAGTCATCGAATATTCGATGGAAGAAGCTCGCAATCTCAATCACAGCTACGTCGGCACCGA GCACATTCTGCTGGGTCTGCTGCGTGAGCAAGAAGGCGTCGCCGCTCAAGTTCTGATGAACTTGGGGCTGAAGCTGGAAG ACGTCCGCGAAGAAGTCCTCAACCTGTTGGGACACGGTCTCGAAGGCGCTGAAGTTGGCGAACGCGGTGGCCGTGGCGGC GACGGCGAAGGCAGCAGTGGCGGCAGCGGAAGCAGCAAGAGCGGCAAGAGCAAAACTCCTGCCCTGGATAGCTTTGGCCG CGACCTGACCGAACTGGCAAAGAAAGGTGAACTTGATCCAGTCATCGGCCGCGAACGAGAAATCGAACGCGCCATCCAAA TTCTTTGCCGTCGTACGAAAAACAACCCCGTCCTGCTGGGCGAAGCCGGTGTCGGTAAAACCGCCATCATCGAAGGCTTT GCACAACGAGTTGTCGGCGGCGAAGTGCCTGAAATCTTGGCCGAGAAACGCATTGTCGTTCTCGACCTCGCCATGATGGT CGCTGGTACCAAGTACCGCGGTCAATTCGAAGAACGCATCAAAGCGGTCATGACCGAAGTGCGTCGCGTCAAGAACACGA TTCTTTTCATCGATGAACTTCACACCCTGGTCGGTGCCGGTGGTGCCGAAGGCGCAATCGACGCTGCCAACGTTCTGAAG CCAGCTTTGGCTCGGGGCGAAATCCAGTGCATCGGTGCAACGACCCTGGACGAGTACCGGAAGTACATCGAAAAGGACAA CGCCCTGGCTCGTCGTTTCCAAGAGATCATGGTCGAGCCAACCGGCAAGACGGAAACAATCGAAATCCTCAAAGGATTGC GTGAACGCTACGAAGAGCACCACCGAGTTCAATTCACCGACGATGCCGTTGTTGCGGCCGTCGAAATGAGCGAACGCTAC ATCACTGCGCGTTGCCTGCCTGACAAGGCTATCGACGTGATCGATGAAGCCGGTGCTCGTGTGCGTCTTCGCACCATGAC TCGTCCACCAGACTTGAAAGAGATCGACGAGCAAGTCGAAACGCTGAACAAGGACAAAGAAGACGCGGTTGCCAACCAAG ACTTCGAAAAAGCCGCCAACCTGCGTGATCAAGCCGAAAAACTTCGCAAGAAGAAAGAGCAGATCACTCAAGAGTGGCGT GAAAAGAGTCAGCAAACCGATGGCGTCGTCGACGAAGAAATCATCGCAGAAGTCGTCAGCAAAATGACGGGCATTCCATT GACTCGATTGTCAACGGAAGACTCCCTGCGTTTGCTGAAGATGGAAGAAGAACTGCACAAACGCGTCGTCAGCCAAAGCC AAGCCGTCACGGCCGTTGCGAAAGCTGTTCGCCGAAGTCGCTCGGGATTGAAAGACCCCAAGCGTCCTACCGGTTCGTTC ATCTTCGCCGGTCCAACCGGTGTCGGTAAAACGTTGCTCGCCAAGGCGCTCGCCGAATACATGTTCGGTGACGCGGATGC GTTGGTGCACATCGACATGTCCGAGTACATGGAGAAACACAACGTTAGCCGTCTGATCGGTGCCCCTCCCGGATTCGTGG GTTACGAAGAAGGTGGTCAGCTGACCGAGAAGATTCGCCGGCGTCCGTACGCGGTCGTGCTGTTCGACGAAATCGAAAAG GCTCACCCCGATGTCTTCAACATGTTGTTGCAAGTCATGGAAGAAGGTCGCCTGACGGATTCGTTCGGACGAAACGTCGA CTTCCGAAACACGATCTTGATCATGACCACCAACGCGGGTGCGGAAGCGATCAAGAACGAATCGGCATTCGGTTTCCAAA AACCCGATGGCGATGCGAGCTACGACTCGATGAAGTCTCGTGTGATGGACCAAATTGAACGCGTCTTCCGTCCTGAGTTC TTGAACCGTTTGGACGACACAATCATCTTCCGTCACTTGACCACGACCGACCTGAAGGGCGTGATCGACTTCGAACTGTC CAAGGTTCGCGAACGTTTGCTCGATCGTGGCTTGGCCATCGATTTAAGCGACGAAGCGAAGGAGTTCTTGATCAAGAAAG GCAGCAACCTCGATTACGGGGCTCGTCCACTTCGCCGTGCGATCGAGCAACGCATCGAAGACCCACTCGGCGAAGAATTG CTGCGTGGTGCTTTCGAAGGCAAGGACACGATCATCATCGATGTTCACAAAGACGACAGTGGCAAGATCACACGTCTGAA CTTCGAAGGCGAAAGCCGCGGCTGGGCAGACAGCGATTCCGAAGAGGAAACCGTGCCTGCCGCCAGCAGCGACGATCAAT CGAAATCCGATGAGTCGTAA Protein sequence : MYERFTDRARKVMQLANQEAQRFNHEYIGTEHILLGLVKEGSGVAANVLKNLEVDLRKIRLEVEKLVQSGPEMVTVGKLP QTPRAKKVIEYSMEEARNLNHSYVGTEHILLGLLREQEGVAAQVLMNLGLKLEDVREEVLNLLGHGLEGAEVGERGGRGG DGEGSSGGSGSSKSGKSKTPALDSFGRDLTELAKKGELDPVIGREREIERAIQILCRRTKNNPVLLGEAGVGKTAIIEGF AQRVVGGEVPEILAEKRIVVLDLAMMVAGTKYRGQFEERIKAVMTEVRRVKNTILFIDELHTLVGAGGAEGAIDAANVLK PALARGEIQCIGATTLDEYRKYIEKDNALARRFQEIMVEPTGKTETIEILKGLRERYEEHHRVQFTDDAVVAAVEMSERY ITARCLPDKAIDVIDEAGARVRLRTMTRPPDLKEIDEQVETLNKDKEDAVANQDFEKAANLRDQAEKLRKKKEQITQEWR EKSQQTDGVVDEEIIAEVVSKMTGIPLTRLSTEDSLRLLKMEEELHKRVVSQSQAVTAVAKAVRRSRSGLKDPKRPTGSF IFAGPTGVGKTLLAKALAEYMFGDADALVHIDMSEYMEKHNVSRLIGAPPGFVGYEEGGQLTEKIRRRPYAVVLFDEIEK AHPDVFNMLLQVMEEGRLTDSFGRNVDFRNTILIMTTNAGAEAIKNESAFGFQKPDGDASYDSMKSRVMDQIERVFRPEF LNRLDDTIIFRHLTTTDLKGVIDFELSKVRERLLDRGLAIDLSDEAKEFLIKKGSNLDYGARPLRRAIEQRIEDPLGEEL LRGAFEGKDTIIIDVHKDDSGKITRLNFEGESRGWADSDSEEETVPAASSDDQSKSDES |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | NP_867440.1 | negative regulator of genetic competence ClpC/MecB | VFG0079 | Protein | 0.0 | 57 |
| clpC | NP_867440.1 | negative regulator of genetic competence ClpC/MecB | VFG0080 | Protein | 3e-142 | 50 |
