Gene Information

Name : RB6271 (RB6271)
Accession : NP_867154.1
Strain : Rhodopirellula baltica SH 1
Genome accession: NC_005027
Putative virulence/resistance : Unknown
Product : integrase/recombinase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 3294814 - 3295791 bp
Length : 978 bp
Strand : +
Note : PMID: 10484179 best DB hits: BLAST: ddbj:BAB05248.1; (AP001512) integraserecombinase [Bacillus; E=1e-56 swissprot:P46352; RIPX_BACSU PROBABLE INTEGRASERECOMBINASE RIPX; E=1e-54 pir:A82080; integraserecombinase XerD VC2419 [imported] - Vibrio; E=5e-53 COG:

DNA sequence : 
TTGAACGCCGTCGAGCACACCAGAGTGGCTAAACGACTCACAAAACTGCAGCAATTGAAGTCCGGACAGACAGAATCCGT
GGCTCCGTCGGCCGGTCAAGCGGTTTGTGATGAATTTTTGGTTTACCTGAAACGGGAATGTCATCTAGCCGACAACACAG
TTGCCGCCTACGGACGAGACATGAAACGTTTCGTCACTTGGATGGACGGACGCCGCCCTGCGGACCTGACAATCACTGAA
TTGTCTGATTTTGTCGCATCGCTTCATGGCGAAGGCCTGGCTCCGGCATCCATCTCGCGGGCCATCGTCGCAATTCGGAC
CTTCTTCAAATACCTGCAGCTCGAAGGTATCACGGTCGACAATCCGGCCGAGCTGCTGGCAACACAGAAGGCTTGGCAGC
GAATGCCGGGCGTCTTGTCGCCAAATGAGGTCGAGGCATTCCTTTCCGCGGTCAAGAAGTCCGATTCGTTTTGGCAACGG
GATCGTGCCCTGCTGGAGGTACTCTACGCCACCGGCTGTCGAGCTTCTGAAGTTTGCACCCTTCGCGTTCGCGACCTGAC
CCTCGATGAGAAGACACTTCGTTGCCACGGCAAAGGCGACAAGCAGCGAATGGTTCCGATTGGCGGCCGCGCGATCCGAG
CGATCCAGCTGTACCTCGAAGAAAGCCGCCATATCCTGGCCGATCGAAATCCGGGACAGATCGATGAACTCTTTCTATCC
CGAGGCGGCAAAGCACTCGACCGAATTCAGTTGTGGCGGCTAGTGAAACGCTATGCCAAGCGTGCAGGGATCTCAGACGA
GATCAGCCCGCACAGTTTGCGACATAGTTTCGCAACTCACTTGCTGGCCGGCGGAGCTGACCTTCGGCAGGTCCAAGAGA
TGCTTGGACACGCCAGCATTCAGACGACCCAGATCTACACACACGTCGAACACTCTCGCCTGCAACGCGTGCACCGGGAC
TTTCACCCGCGAGCGTGA

Protein sequence : 
MNAVEHTRVAKRLTKLQQLKSGQTESVAPSAGQAVCDEFLVYLKRECHLADNTVAAYGRDMKRFVTWMDGRRPADLTITE
LSDFVASLHGEGLAPASISRAIVAIRTFFKYLQLEGITVDNPAELLATQKAWQRMPGVLSPNEVEAFLSAVKKSDSFWQR
DRALLEVLYATGCRASEVCTLRVRDLTLDEKTLRCHGKGDKQRMVPIGGRAIRAIQLYLEESRHILADRNPGQIDELFLS
RGGKALDRIQLWRLVKRYAKRAGISDEISPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHVEHSRLQRVHRD
FHPRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 5e-39 43
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 5e-39 43