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Name : RB3482 (RB3482) Accession : NP_865534.1 Strain : Rhodopirellula baltica SH 1 Genome accession: NC_005027 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1801140 - 1802831 bp Length : 1692 bp Strand : + Note : PMID: 1944223 best DB hits: BLAST: pir:D82672; general secretory pathway protein E XF1517 [imported] -; E=1e-114 swissprot:P31742; GSPE_XANCP GENERAL SECRETION PATHWAY PROTEIN E; E=1e-110 pir:T12056; xpsE protein - Xanthomonas campestris pv. campestris; E DNA sequence : ATGATCATGCATGCTGGCGAGATTCTGCAACGACGCGGATTGCTGACGCCCCAACAGTTGGAACAGAGCCGCAACGGTGA CCCTCAATCGGTCGTCGACAACGCGGTGACCTTGGGGTACGTGTCGGCGCGAGATGCCCTGTCCGCGATTGCAGATGAGG TCGGCTTGGAATTTCGTGACCTTCGCACGTCGGAGATTGATCTGTCCGCTTTGGAGGGCTTCCCGCAAAAGCTGATCTAT CGCCACTCCATGTTCCCGATCGGATGGGACGACGGTGCGTTGTTGGTTGCGACGGCGGATCCGTTTGATCTGTATCCACT CGATGAAGCTTGCGCAACGACCGGTAAAACGGTTGTTCCCGTCGTCGCCGAACGTGGCGAAATCAGTCGCTTGGTGAAGA AGCACCTCGGTGTCGGCAGCGAAACAGTCGAAGGGCTGGTCGCGGCTGCCGGCGACGAAGAAGTGGAACTGCTGGACGGC ATCGAGACCGATGGCAGTGAACTGTCGGAGATGGCTCAAGAAGCGTCGGTCGTTCGGCTGGTCAATGAAATTTTGATCGA AGCCGTTGATTCGCGTGCCAGTGACATTCACATCGAATCTCAATCCGATGGTTTGGTCATTCGATACCGGATTGACGGAA TCTTGCATCCGCAACCGGTTCCGCCCGAAATCAATCGTTTCCAAGCTGCGATCATCAGTCGTCTGAAGATCATGGCTCGA TTGAACATCGCCGAAAAACGATTGCCTCAGGACGGCCGGATCAAACTTCGAGTTCATGGACGCGAAGTCGACATTCGTCT CAGCGTGATTCCCATGATCCACGGCGAAGGCCTGGTCATGCGTGTTCTCGACAAATCATCGATGGTGTTTGATCTTCAAG GACTTGGGATGTCCAAAGAGATCTATGACCGATTCAGCCAGTTGATCAAATTGCCGCACGGAATCGTGTTGGTCACCGGC CCGACGGGTAGTGGTAAAACGACGACGCTGTACAGCAGTTTGCTGGAGATCCGTAGTCCTGAGAACAAGATCATCACGAC GGAAGATCCCGTTGAGTATCAGCTCGATGGAATCAACCAGATCCAAGTTCACTCTAAAATTGGACTGACATTCGCCGCGT CACTTCGAAGTATCCTGCGTCATGACCCGGACATCGTGCTGGTCGGGGAAATTCGTGACTTGGAAACCGCCGAGAATGCG ACCCAAGCATCGTTGACCGGTCACATGGTGTTTAGCACCTTGCACACCAACGATGCGGCCGGTGCTTTCACTCGGATGGT CGATATGGGCGTTGAACCGTTCTTGGTTGCCGGAACGGTCGAAGCTGTGATGGCTCAACGATTGCTTCGGCGGTTGTGCC CTCATTGCAAGGAAGCCATCCGGCCTGATCGAGACGATTTGCCGAAGGATTTTCCTTGGGATGAAATTGAAGGCAAAGAA ATCTACCGCAGCGTTGGTTGTCGTGAGTGCCGCAACGTTGGCTACTCCGGTCGTTTGGGGATCTACGAACTTCTCGTCAG CAGCGAGCAGATTCGCGAGATGGCTCAGAACCGCGCCAGCAGTTGGGACATTCGTCGCCAGGCGGTCAAGGAAGGCATGC GAACGCTTCGGATGGATGCCTGGGACAAAGTCGTTGCTGGTGTGACCAGTGTTGACGAAGTCCTTCGTGTGACAAAGGGC GAAGCTCTCTAG Protein sequence : MIMHAGEILQRRGLLTPQQLEQSRNGDPQSVVDNAVTLGYVSARDALSAIADEVGLEFRDLRTSEIDLSALEGFPQKLIY RHSMFPIGWDDGALLVATADPFDLYPLDEACATTGKTVVPVVAERGEISRLVKKHLGVGSETVEGLVAAAGDEEVELLDG IETDGSELSEMAQEASVVRLVNEILIEAVDSRASDIHIESQSDGLVIRYRIDGILHPQPVPPEINRFQAAIISRLKIMAR LNIAEKRLPQDGRIKLRVHGREVDIRLSVIPMIHGEGLVMRVLDKSSMVFDLQGLGMSKEIYDRFSQLIKLPHGIVLVTG PTGSGKTTTLYSSLLEIRSPENKIITTEDPVEYQLDGINQIQVHSKIGLTFAASLRSILRHDPDIVLVGEIRDLETAENA TQASLTGHMVFSTLHTNDAAGAFTRMVDMGVEPFLVAGTVEAVMAQRLLRRLCPHCKEAIRPDRDDLPKDFPWDEIEGKE IYRSVGCRECRNVGYSGRLGIYELLVSSEQIREMAQNRASSWDIRRQAVKEGMRTLRMDAWDKVVAGVTSVDEVLRVTKG EAL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-88 | 48 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-88 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RB3482 | NP_865534.1 | general secretion pathway protein E | VFG0182 | Protein | 2e-94 | 50 |
| RB3482 | NP_865534.1 | general secretion pathway protein E | VFG2048 | Protein | 9e-89 | 48 |
| RB3482 | NP_865534.1 | general secretion pathway protein E | VFG1876 | Protein | 6e-90 | 46 |
| RB3482 | NP_865534.1 | general secretion pathway protein E | VFG0233 | Protein | 7e-80 | 46 |
| RB3482 | NP_865534.1 | general secretion pathway protein E | VFG2426 | Protein | 6e-75 | 44 |
