|
Name : RB3313 (RB3313) Accession : NP_865434.1 Strain : Rhodopirellula baltica SH 1 Genome accession: NC_005027 Putative virulence/resistance : Unknown Product : RNA binding protein Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 1700394 - 1702646 bp Length : 2253 bp Strand : - Note : PMID: 10952301 best DB hits: BLAST: pir:E82042; conserved hypothetical protein VC2716 [imported] -; E=0.0 swissprot:P57072; YHGF_NEIMA HYPOTHETICAL PROTEIN NMA0194 -----; E=1e-179 swissprot:P71353; YHGF_HAEIN HYPOTHETICAL PROTEIN HI0568 -----; E=1e-177 CO DNA sequence : TTGAGATGGCACAACGGCGGCACGCTTGAGTATCACTGCCGCTCGATCGTTTCATCCGAAATGATTTTCCGGTCCACCCT CGACTTCGCAACCTTTCGCAGCACTGACGTCCGTCCTATGCAATCCATCGCTCGTGAACTGAATCTTCCTGAGAAACAAG TCGCCGCGGTCATCGAGTTACTCGAAGCCGGCAACACGATCCCTTTCATTGCACGGTATCGCAAAGAGGTCACCGGCGGA CTAGACGAAATCGCTCTACGCGCGATCGAAGACGCGCTCGAAAAGCACACCGCGCTGCTCGCTCGAAAGGCCACCGTCTT AAACACAATCGAAGAGCAAGGTGCCCTGACCGCTGAACTGCGCAAACAGATCGAAGCCTGCACAGATCTGCGAACTCTGG AAGCTTTGTACCTGCCGTACAAACCCAAACGCCGAACCCGAGCGACGATCGCACGCGAAAAAGGTTTGCAACCACTGGCG GATCTGCTGCTGAAGCAAACCAAACTTCCCCAATCGAAGCAGCAAACGCTGCAGTCATTCGTCAACCAAGAACTGGATGT CGCTGACACCGATGCGGCTCTGGCGGGCGCTCTCGACATCGTTGCCGAACAGTGGAGCGAGGATCCAACGGTTCGCGAAT GGATGGTCGAAAAGGGAACCAAGTTCGGACAGATCACATCAGCCGTCAAACGCGGTAAGAAGGACGAAGCGGACAAATAC GAAGCCTACCTGGATCGTTCCGAATCAGCCTCTCGCATTCCCGGTCACCGATTGCTTGCGATGTTGCGTGGCGAAGCGGA GGGTGTTCTGCGTGTCGGGCTGAAAATGGAAGAAGACCGAGCCATCTCGCATGTCAAATCCACTTTCATCCAGAACCGCT CCTTCGAATTCGCTAGAGAACTCGAATCAGCCGCAGAAGACTGTTTTCAACGTTTGCTTCAACCGGCAACGCAGTCCACC GTCCTGCAAATGTTAAAAGAGAAAGCCGACGAAGAAGCCATCGATGTGTTTGGAAAAAACCTGCACGAGCTTCTGATGTC GCCTCCCGCCGGTCCTCGCGTGACGATCGGTATCGATCCCGGTTTTCGCACCGGATGCAAAGTTGCCGTGGTCGATGGCA CGGGAAAGTTCTTGGCCAACACCACGATCTATCCAACGCCGCCCAAATCCGACACTGCCGGAGCATCAAAACAGCTACTC GCACTCATAAAGAAACACAATGTTGAACTGATCGCAATTGGCAACGGGACCGCCTCGCGAGAAACCGATGCCTTTGTCGG TCAACTCATTCGCGACAACAAACTCGATGTGACCAAGGTGATGGTCAGCGAATCTGGTGCGTCGATCTATTCGGCCAGCG AACTGGCTGGCAAAGAATTCCCCGATTTGGACGTCACCGTTCGTGGTGCCATCAGCATCGCACGCCGCCTGCAAGATCCG CTGGCGGAATTGGTCAAGACCGATCCGAAATCAATCGGTGTGGGGCAGTACCAACACGACGTGAATCAGACCCAGCTTCG CAAGTGCCTCGATCGAACCGTCGAAAGCTGCGTGAACCGCGTCGGCGTCGACTTGAATATGGCAAGCGTTCCTTTGCTGT CGCGAGTGGCCGGCATCGGACCGAAATTGGCCGAGAACATCGTTCAGTATCGCGACACAAACGGGCGTTTCGGCAGCCGA AAGGAATTGACCAAGGTACCCAAACTTGGCAAGAAAGCCTTCGAACAAGCCGCCGGCTTTTTGCGAATTCGCGGTGGTGA TGAACCTCTCGACAATTCCGCCGTGCACCCGGAAAGCTACACGCTGGTCAGTCGCATGGCCAAGCAGCTCCATGCCGACG TGAAGACGTTGGTTGGCAACGCGACGCTCAGCCAAAAACTGCAACCCGATTCATTTGTCGACGATCGCTTCGGCATTCCA ACCATCCGTGACATCATCGCGGAACTGGGCAAACCTGGCCGCGATCCGCGAAGCGAATTCAAAGTCGCCCAGTTCGATGA TTCGGTCCAATCGATGGAAGATCTTCGCGAAGGAATGGTGCTGGAAGGCGTCATCACCAACGTGACGCACTTCGGCGCGT TCATCGATCTCGGTGTCCACCAAGACGGACTGATCCACGTTTCTCAGTTGGCCAACCAATTCGTCAGCGATCCTTCCGAA GTCGTTTCGGTCGGCGATGTTGTCAAAGTCAAAGTCCTCGAAATTGACCTCGATCGCAAACGAATCGCCGTCTCCAAGAA GGCTCTTGGATAA Protein sequence : MRWHNGGTLEYHCRSIVSSEMIFRSTLDFATFRSTDVRPMQSIARELNLPEKQVAAVIELLEAGNTIPFIARYRKEVTGG LDEIALRAIEDALEKHTALLARKATVLNTIEEQGALTAELRKQIEACTDLRTLEALYLPYKPKRRTRATIAREKGLQPLA DLLLKQTKLPQSKQQTLQSFVNQELDVADTDAALAGALDIVAEQWSEDPTVREWMVEKGTKFGQITSAVKRGKKDEADKY EAYLDRSESASRIPGHRLLAMLRGEAEGVLRVGLKMEEDRAISHVKSTFIQNRSFEFARELESAAEDCFQRLLQPATQST VLQMLKEKADEEAIDVFGKNLHELLMSPPAGPRVTIGIDPGFRTGCKVAVVDGTGKFLANTTIYPTPPKSDTAGASKQLL ALIKKHNVELIAIGNGTASRETDAFVGQLIRDNKLDVTKVMVSESGASIYSASELAGKEFPDLDVTVRGAISIARRLQDP LAELVKTDPKSIGVGQYQHDVNQTQLRKCLDRTVESCVNRVGVDLNMASVPLLSRVAGIGPKLAENIVQYRDTNGRFGSR KELTKVPKLGKKAFEQAAGFLRIRGGDEPLDNSAVHPESYTLVSRMAKQLHADVKTLVGNATLSQKLQPDSFVDDRFGIP TIRDIIAELGKPGRDPRSEFKVAQFDDSVQSMEDLREGMVLEGVITNVTHFGAFIDLGVHQDGLIHVSQLANQFVSDPSE VVSVGDVVKVKVLEIDLDRKRIAVSKKALG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 1e-161 | 52 |
