Gene Information

Name : RB3157 (RB3157)
Accession : NP_865348.1
Strain : Rhodopirellula baltica SH 1
Genome accession: NC_005027
Putative virulence/resistance : Unknown
Product : integrase/recombinase Y4QK
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 1627662 - 1629014 bp
Length : 1353 bp
Strand : +
Note : PMID: 7607529 PMID: 9163424 PMID: 8402918 best DB hits: BLAST: gb:AAA88676.1; (M33633) unknown protein [Transposon Tn21]; E=1e-56 embl:CAA75043.1; (Y14748) int [Corynebacterium glutamicum]; E=4e-56 gb:AAF72980.1; AF255921_1 (AF255921) recombinase [Shigell

DNA sequence : 
ATGGGAACGTTTTCGAAACCGGCGAGTGCCGAACAGAAGCAGCGTTGGGCGAAGATATGGTTCCAAAAGCTTTGCCAATT
TCACCGGCGGAAGACGGAACCGGATTGGAAGTTTTCGGCCGATGATGTGATTGCTTTCTTGCGGTCACGTCGCGATGCGG
AGGTGCCGGCTTGGAAGCGGATGAAGATCATCGAAGGCTTGATTCAGTACCGTGAGACGATCCAGCGTCGAGAGGTGAAC
GACCTGTTGCCGCTGAAGAAAAAGATGGGCGAGATCATCTTGATCGAGCAAGCCAAGACAGGCGGGTTGGATTCGATCGA
CGATGTGGTCGGCAAGATCAATCCCAACGAGATGGATGCGATTCAGGAGTTCCGTCGATCGATGCGTCGAGCTGGTTTGG
CGATCGCGACCGAGCGTTGTTACGTGAGGAAGCTGAAGGCGTTCATGGCGGATCGTGGGCTGAATTGTCTGGCGGATTTC
GACCGGATTCACGCTTGTGACGTGGAGGCTCACCTGACGGATTTGGCGGTCGATGGCAACGTTTCTCCGTCGACTCAGAA
CCAAGCATTTCATTCGTTGCTGAAGTTTTTCGAGTTGGTGCTGAAGCGTGAGATGGGGAAGATCGAAGCGATCCGTGCGA
ACAAGGATTCGATGGCCCCCACGGTGATGTCACCAGAGGAGGTCGGCCAAGTGTTCGAGGGACTCGAGGGCGTGTATCTG
GTGATCGCGAAGTTGCTGTATGGTTGCGGGATGAGGATCAGTGAGACGCATCGGTTGCGGGTCAAGGACATTGATTTCGC
AAACAAGCAAATCGAGATTCGTCAGTCCAAGGGCAACAAGAGCCGATTGGTTCCGATGCCAGATGATTTGATTGAACCGC
TGCGGCGTTTTGTCAAGACTCGCGACGCACTGCACGAACATGATTTGGCCAACGGCACGGCCTCGGTGTATCTGCCGTAT
GCGTTGGACCGGAAGTATCCGTCGGCGCATCGTGAACTGAAGTGGCAGTATCTGTTTGCGTCGCACCGATTGTCACGGGA
TCCGAGAACCGGCCGCATCCACCGTCATCACTTGCGCGCAACCACCTTCCCGACTCACTTGCGACGCGCGGTGGAACAGG
CGGGGATTCTGAAGCATGTGACGAGCCACACGTTTCGCCATTGTTTTGCGACGCATCTGTTGTGGCAGGGGACGGACATT
CGCCAGATTCAGCAGTTGCTGGGGCACAGTGACGTGAAGACGACGGAGATCTACACGCATGTGCGGAATCCACATGAGGC
GAAGGTGGTCAGTCCGTTGGATCGGTTGGTGCGGGAAGAGGTGGCGGGTATTGGTTGCGCTCGGGCCGACTGA

Protein sequence : 
MGTFSKPASAEQKQRWAKIWFQKLCQFHRRKTEPDWKFSADDVIAFLRSRRDAEVPAWKRMKIIEGLIQYRETIQRREVN
DLLPLKKKMGEIILIEQAKTGGLDSIDDVVGKINPNEMDAIQEFRRSMRRAGLAIATERCYVRKLKAFMADRGLNCLADF
DRIHACDVEAHLTDLAVDGNVSPSTQNQAFHSLLKFFELVLKREMGKIEAIRANKDSMAPTVMSPEEVGQVFEGLEGVYL
VIAKLLYGCGMRISETHRLRVKDIDFANKQIEIRQSKGNKSRLVPMPDDLIEPLRRFVKTRDALHEHDLANGTASVYLPY
ALDRKYPSAHRELKWQYLFASHRLSRDPRTGRIHRHHLRATTFPTHLRRAVEQAGILKHVTSHTFRHCFATHLLWQGTDI
RQIQQLLGHSDVKTTEIYTHVRNPHEAKVVSPLDRLVREEVAGIGCARAD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 1e-49 43
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 3e-49 43
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 3e-49 43
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 1e-49 43
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 3e-49 43
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 3e-49 43
intI YP_001844881.1 integrase Not tested AbaR20 Protein 5e-49 43
intI1 AAK02045.1 integrase Not tested SGI1 Protein 1e-49 43
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 3e-49 43
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 5e-49 43
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 1e-49 43
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 3e-49 43
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 5e-49 43
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 1e-49 43
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 3e-49 43
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 5e-49 43
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 1e-49 43
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 3e-49 43
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 4e-49 43
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 1e-49 43
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 3e-49 43
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 3e-49 43
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 1e-49 43
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 3e-49 43
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 3e-49 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RB3157 NP_865348.1 integrase/recombinase Y4QK VFG1028 Protein 2e-49 43